RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CATSPERGQ6ZRH7 1159 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 ADGRA1Q86SQ6 560 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 GCNT2Q8N0V5 402 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 NUP43Q8NFH3 380 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 PPTC7Q8NI37 304 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 ZNF331Q9NQX6 463 aaPredicted RBP10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 HHLA2Q9UM44 414 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 SCML1Q9UN30 329 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 CAMK2AQ9UQM7 478 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 C5AR1P21730 350 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 RFX2P48378 723 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 SUMO1P63165 101 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 ZNF791Q3KP31 576 aaPredicted RBP10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 PXDC1Q5TGL8 231 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 OR1J2Q8NGS2 313 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 TOMM40LQ969M1 308 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 FAM46AQ96IP4 442 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 CHRDL1Q9BU40 450 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 NWD1Q149M9 1564 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 NID2Q14112 1375 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 LRIT2A6NDA9 550 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 H7BYZ3 331 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 ZNF623O75123 536 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 SOCS5O75159 536 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 ADORA3P0DMS8 318 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 PNMTP11086 282 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 CD1DP15813 335 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 MTNR1BP49286 362 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 POU3F4P49335 361 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 HNRNPA3P51991 378 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 CATR1Q13166 79 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 CNN3Q15417 329 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 ZNF239Q16600 458 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 NKPD1Q17RQ9 610 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 UNC50Q53HI1 259 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 MS4A13Q5J8X5 152 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 PSRC1Q6PGN9 363 aaPredicted RBP10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 TMEM156Q8N614 296 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 CLRN3Q8NCR9 226 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 OR13F1Q8NGS4 319 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 ASB17Q8WXJ9 295 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 ZNF300Q96RE9 604 aaPredicted RBP10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 DCAF13Q9NV06 445 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 PLEKHJ1Q9NW61 149 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 HES2Q9Y543 173 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 B3GALT1Q9Y5Z6 326 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 SEC14L6B5MCN3 397 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 CNOT4O95628 575 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 OLFM2O95897 454 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 TFAP2AP05549 437 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 OR12D1P0DN82 309 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 GHRHRQ02643 423 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 DNAJC5GQ8N7S2 189 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 OR13C2Q8NGS9 318 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 APH1BQ8WW43 257 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 ATRNO75882 1429 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 A0A1W2PPK0 400 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 NME4O00746 187 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 WNT7AO00755 349 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 TRAF3IP2O43734 574 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 UGDHO60701 494 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 CLDN6P56747 220 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 P2RY14Q15391 338 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 APOBEC3HQ6NTF7 200 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 PLBD1Q6P4A8 553 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 OR52E2Q8NGJ4 325 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 RAB8BQ92930 207 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 ANKRD19PQ9H560 264 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 RYDENQ9NUL5 291 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 RASD1Q9Y272 281 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 TMEM98Q9Y2Y6 226 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 FCF1Q9Y324 198 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 SCAMP2O15127 329 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 UBL4AP11441 157 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 PRDX3P30048 256 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 ADCYAP1R1P41586 468 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 FASLGP48023 281 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 CD81P60033 236 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 SLC25A11Q02978 314 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 FUT2Q10981 343 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 HTR4Q13639 388 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 LCN10Q6JVE6 187 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 UQCC3Q6UW78 93 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 APOOLQ6UXV4 268 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 WDR5BQ86VZ2 330 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 ADGRG5Q8IZF4 528 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 OR4K15Q8NH41 348 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 FAM213BQ8TBF2 198 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 NANOS1Q8WY41 292 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 HERVK_113Q902F9 699 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 WRAP53Q9BUR4 548 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 HINT2Q9BX68 163 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 NMNAT1Q9HAN9 279 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 PCDHA9Q9Y5H5 950 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 MRPL42Q9Y6G3 142 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 M0QZK8 103 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 GGCTO75223 188 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 FBXO24O75426 580 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 RGS11O94810 467 aa10.62□□□□□ -0.71
LIMCH1-217ENST00000512946 MPIG6BO95866 241 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms