RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 LAMP5Q9UJQ1 280 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 SBF2Q86WG5 1849 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 CCDC88CQ9P219 2028 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 MGAMO43451 1857 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 A0A1W2PPK0 400 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 FFAR2O15552 330 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 OR2A4O95047 310 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 PEX11BO96011 259 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 ACTL6AO96019 429 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 PDYNP01213 254 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 RLN1P04808 185 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 ATXN1LP0C7T5 689 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 SNRPBP14678 240 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 TYRP14679 529 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 IDSP22304 550 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 CPT2P23786 658 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 CCR9P51686 369 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 GFOD2Q3B7J2 385 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 SLC25A35Q3KQZ1 300 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 CDNFQ49AH0 187 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 DCAF12L2Q5VW00 463 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 ZNF546Q86UE3 836 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 MEX3DQ86XN8 651 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 KLHDC8BQ8IXV7 354 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 ARIH2OSQ8N7S6 290 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 ISOC2Q96AB3 205 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 RAB3CQ96E17 227 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 CDKN2AIPNLQ96HQ2 116 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 OR2A7Q96R45 310 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 WDR13Q9H1Z4 485 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 TSPAN10Q9H1Z9 355 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 HRASLSQ9HDD0 168 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 TNFSF13BQ9Y275 285 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 FAM96BQ9Y3D0 163 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 PPP2R3BQ9Y5P8 575 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 F5H5P2 479 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 ZNF197O14709 1029 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 KLHL18O94889 574 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 PMP2P02689 132 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 HCKP08631 526 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 HOXC4P09017 264 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 LIMS3P0CW19 117 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 LIMS4P0CW20 117 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 GNG10P50151 68 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 ART1P52961 327 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 DLX5P56178 289 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 DAOAP59103 153 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 PPIAP62937 165 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 SFXN4Q6P4A7 337 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 UQCC3Q6UW78 93 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 PNPLA2Q96AD5 504 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 SCN1AP35498 2009 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 TRBC2A0A5B9 178 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 UBE2QL1A1L167 161 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 YY2O15391 372 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 FADS1O60427 444 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 RHOP08100 348 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 UBBP0CG47 229 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 UBCP0CG48 685 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 LAMP1P11279 417 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 EPXP11678 715 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 PKMP14618 531 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 S100A2P29034 98 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 DDTP30046 118 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 RPS27AP62979 156 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 UBA52P62987 128 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 KLF9Q13886 244 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 RGNQ15493 299 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 PLEKHN1Q494U1 663 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 LRRC37A5PQ49AS3 106 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 TMEM201Q5SNT2 666 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 FIGNL1Q6PIW4 674 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 TECPR1Q7Z6L1 1165 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 OR4D9Q8NGE8 314 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 SPRYD4Q8WW59 207 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 HIST1H2BAQ96A08 127 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 TGM7Q96PF1 710 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 TM6SF2Q9BZW4 377 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 RIMS4Q9H426 269 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 FZD8Q9H461 694 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 ZSCAN32Q9NX65 697 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 STOX2Q9P2F5 926 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 TESQ9UGI8 421 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 PCDHB11Q9Y5F2 797 aa11.29□□□□□ -0.6
LIMCH1-213ENST00000511496 KANTRA0A1W2PQU2 76 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 TMEM72A0PK05 275 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 TMEM88BA6NKF7 163 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 RB1P06400 928 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 C1SP09871 688 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 PDHA2P29803 388 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 PNLIPRP2P54317 469 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 ACSM5Q6NUN0 579 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 SYT9Q86SS6 491 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 FBXO15Q8NCQ5 510 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 FAM71CQ8NEG0 241 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 WFIKKN2Q8TEU8 576 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 TNFAIP8L1Q8WVP5 186 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 RELTQ969Z4 430 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 ZNF408Q9H9D4 720 aa11.28□□□□□ -0.6
LIMCH1-213ENST00000511496 HMX1Q9NP08 348 aaPredicted RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms