RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 ACAA1P09110 424 aaPredicted RBP3.55□□□□□ -1.84
USP54-217ENST00000498213 HIST1H2AGP0C0S8 130 aaPredicted RBP3.55□□□□□ -1.84
USP54-217ENST00000498213 ITGA2P17301 1181 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 HIST1H2ADP20671 130 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 PEBP1P30086 187 aaKnown RBP3.55□□□□□ -1.84
USP54-217ENST00000498213 TIMP3P35625 211 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 MAGEA1P43355 309 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 MAGEA6P43360 314 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 OR1D4P47884 311 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 ZFP36L2P47974 494 aaKnown RBP3.55□□□□□ -1.84
USP54-217ENST00000498213 RGS4P49798 205 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 PNLIPRP1P54315 467 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 HSD17B7P56937 341 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 ARF3P61204 181 aaPredicted RBP3.55□□□□□ -1.84
USP54-217ENST00000498213 ACTG1P63261 375 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 ACTN3Q08043 901 aaPredicted RBP3.55□□□□□ -1.84
USP54-217ENST00000498213 RGS1Q08116 209 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 POU6F1Q14863 301 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 EFTUD2Q15029 972 aaKnown RBP eCLIP3.55□□□□□ -1.84
USP54-217ENST00000498213 NSDHLQ15738 373 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 HSPB2Q16082 182 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 CDKL4Q5MAI5 379 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 C6orf52Q5T4I8 152 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 RIPPLY2Q5TAB7 128 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 LRRC8BQ6P9F7 803 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 KLHL17Q6TDP4 642 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 MAATS1Q7Z4T9 603 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 PM20D2Q8IYS1 436 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 CNPY4Q8N129 248 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 FBXW8Q8N3Y1 598 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 TMEM156Q8N614 296 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 LRRC17Q8N6Y2 441 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 LRRC57Q8N9N7 239 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 TC2NQ8N9U0 490 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 TRPV3Q8NET8 790 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 OR4K1Q8NGD4 311 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 OR5L2Q8NGL0 311 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 DAZLQ92904 295 aaKnown RBP3.55□□□□□ -1.84
USP54-217ENST00000498213 SLCO2A1Q92959 643 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 TM4SF19Q96DZ7 209 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 MMABQ96EY8 250 aaPredicted RBP3.55□□□□□ -1.84
USP54-217ENST00000498213 SIGLEC12Q96PQ1 595 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 H2AFJQ9BTM1 129 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 IFT27Q9BW83 186 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 TRIM31Q9BZY9 425 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 ROGDIQ9GZN7 287 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 VN1R1Q9GZP7 353 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 CCDC68Q9H2F9 335 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 XKR8Q9H6D3 395 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 ZNF696Q9H7X3 374 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 ZDHHC11Q9H8X9 412 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 UBTD1Q9HAC8 227 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 KCNK13Q9HB14 408 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 PLAC1Q9HBJ0 212 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 OBP2BQ9NPH6 170 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 CCDC177Q9NQR7 707 aaPredicted RBP3.55□□□□□ -1.84
USP54-217ENST00000498213 TREX1Q9NSU2 369 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.55□□□□□ -1.84
USP54-217ENST00000498213 MTRF1LQ9UGC7 380 aaKnown RBP3.55□□□□□ -1.84
USP54-217ENST00000498213 TTC7AQ9ULT0 858 aaPredicted RBP3.55□□□□□ -1.84
USP54-217ENST00000498213 MRPS33Q9Y291 106 aaKnown RBP3.55□□□□□ -1.84
USP54-217ENST00000498213 DTX4Q9Y2E6 619 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 RAP2CQ9Y3L5 183 aa3.55□□□□□ -1.84
USP54-217ENST00000498213 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.55□□□□□ -1.84
USP54-217ENST00000498213 NUP210LQ5VU65 1888 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 DOCK10Q96BY6 2186 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 IGKV3D-11A0A0A0MRZ8 115 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 A0A0J9YVX5 310 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 TRBC2A0A5B9 178 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 SAGE2PA6NJ88 616 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 GABRR3A8MPY1 467 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 E5RI56 91 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 PSMD12O00232 456 aaPredicted RBP3.54□□□□□ -1.84
USP54-217ENST00000498213 ACOT8O14734 319 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 NDC80O14777 642 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 TFECO14948 347 aaPredicted RBP3.54□□□□□ -1.84
USP54-217ENST00000498213 SPRY3O43610 288 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 HCRTR1O43613 425 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 PDE9AO76083 593 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 ACTL6BO94805 426 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 SOX30O94993 753 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 TTC4O95801 387 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 HLA-DQA2P01906 255 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 PRSS2P07478 247 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 FHP07954 510 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 SERPINA6P08185 405 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 ARSBP15848 533 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 HOXB9P17482 250 aaPredicted RBP3.54□□□□□ -1.84
USP54-217ENST00000498213 TPSB2P20231 275 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 CHMP24386 653 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 PPP2R1BP30154 601 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 SERPINB1P30740 379 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 XCR1P46094 333 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 HNMTP50135 292 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 RASSF2P50749 326 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 CCR8P51685 355 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 EIF3BP55884 814 aaKnown RBP3.54□□□□□ -1.84
USP54-217ENST00000498213 MLF1P58340 268 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 SLC26A5P58743 744 aa3.54□□□□□ -1.84
USP54-217ENST00000498213 RPP38P78345 283 aaKnown RBP3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms