RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 LHX2P50458 406 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 ANXA11P50995 505 aaKnown RBP8.27□□□□□ -1.09
HDAC6-232ENST00000489053 CCR4P51679 360 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 AGFG1P52594 562 aaKnown RBP8.27□□□□□ -1.09
HDAC6-232ENST00000489053 GFRA1P56159 465 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 CLDN8P56748 225 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 BST1Q10588 318 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 BCL2A1Q16548 175 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 DPY19L1Q2PZI1 675 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 GLYR1Q49A26 553 aaPredicted RBP8.27□□□□□ -1.09
HDAC6-232ENST00000489053 FLYWCH1Q4VC44 716 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 DCST2Q5T1A1 773 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 CCNJQ5T5M9 372 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 CDC73Q6P1J9 531 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 CDH24Q86UP0 819 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 WDR75Q8IWA0 830 aaKnown RBP8.27□□□□□ -1.09
HDAC6-232ENST00000489053 DMRTC2Q8IXT2 367 aaPredicted RBP8.27□□□□□ -1.09
HDAC6-232ENST00000489053 ZZZ3Q8IYH5 903 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 GCNT2Q8N0V5 402 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 TRIML2Q8N7C3 387 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 OR5AK3PQ8NH89 298 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 B4GALNT2Q8NHY0 566 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 MBD3L2Q8NHZ7 208 aaPredicted RBP8.27□□□□□ -1.09
HDAC6-232ENST00000489053 PHOSPHO1Q8TCT1 267 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 DYDC1Q8WWB3 177 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 CDS1Q92903 461 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 RNASE6Q93091 150 aaKnown RBP8.27□□□□□ -1.09
HDAC6-232ENST00000489053 C1GALT1C1Q96EU7 318 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 REXO5Q96IC2 774 aaKnown RBP8.27□□□□□ -1.09
HDAC6-232ENST00000489053 SLC35G5Q96KT7 338 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 CXorf36Q9H7Y0 433 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 CACYBPQ9HB71 228 aaKnown RBP8.27□□□□□ -1.09
HDAC6-232ENST00000489053 NPDC1Q9NQX5 325 aaPredicted RBP8.27□□□□□ -1.09
HDAC6-232ENST00000489053 THAP1Q9NVV9 213 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 GIN1Q9NXP7 522 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 ASIC5Q9NY37 505 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 FLRT3Q9NZU0 649 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 NTMQ9P121 344 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 MARCOQ9UEW3 520 aaPredicted RBP8.27□□□□□ -1.09
HDAC6-232ENST00000489053 ITGB1BP2Q9UKP3 347 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 MCTS1Q9ULC4 181 aaKnown RBP8.27□□□□□ -1.09
HDAC6-232ENST00000489053 VDAC3Q9Y277 283 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 AP4B1Q9Y6B7 739 aa8.27□□□□□ -1.09
HDAC6-232ENST00000489053 MAP1AP78559 2803 aaPredicted RBP8.26□□□□□ -1.09
HDAC6-232ENST00000489053 ANKRD17O75179 2603 aaKnown RBP8.26□□□□□ -1.09
HDAC6-232ENST00000489053 OTOGQ6ZRI0 2925 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 GIMAP1-GIMAP5A0A087WTJ2 511 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 OR2M5A3KFT3 312 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 TUBAL3A6NHL2 446 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 GJE1A6NN92 205 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 ALG1L2C9J202 215 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 EIF1AYO14602 144 aaKnown RBP8.26□□□□□ -1.09
HDAC6-232ENST00000489053 CASKO14936 926 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 HDAC3O15379 428 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 SMNDC1O75940 238 aaKnown RBP eCLIP8.26□□□□□ -1.09
HDAC6-232ENST00000489053 OXSR1O95747 527 aaPredicted RBP8.26□□□□□ -1.09
HDAC6-232ENST00000489053 IL18BPO95998 194 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 AK1P00568 194 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 NGFRP08138 427 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 DHRS4L1P0CG22 281 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 ZNF708P17019 499 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 CEACAM8P31997 349 aaPredicted RBP8.26□□□□□ -1.09
HDAC6-232ENST00000489053 S100A3P33764 101 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 EIF1P41567 113 aaKnown RBP8.26□□□□□ -1.09
HDAC6-232ENST00000489053 EIF1AXP47813 144 aaKnown RBP8.26□□□□□ -1.09
HDAC6-232ENST00000489053 KCNJ5P48544 419 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 GAS1P54826 345 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 NME5P56597 212 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 TFF3Q07654 80 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 LRRC74AQ0VAA2 488 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 FGFBP1Q14512 234 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 OR4F3Q6IEY1 312 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 SPATA19Q7Z5L4 167 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 LUZP2Q86TE4 346 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 LIX1LQ8IVB5 337 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 LRRC34Q8IZ02 419 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 FADS6Q8N9I5 356 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 C9orf106Q8NAJ2 232 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 OR5M1Q8NGP8 315 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 RFWD2Q8NHY2 731 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 RAB3IL1Q8TBN0 382 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 ZBTB8AQ96BR9 441 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 COQ8BQ96D53 544 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 GIMAP5Q96F15 307 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 RBM24Q9BX46 236 aaKnown RBP8.26□□□□□ -1.09
HDAC6-232ENST00000489053 PINK1Q9BXM7 581 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 PIGMQ9H3S5 423 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 PIGUQ9H490 435 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 ZNF395Q9H8N7 513 aaPredicted RBP8.26□□□□□ -1.09
HDAC6-232ENST00000489053 FANCFQ9NPI8 374 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 TIGARQ9NQ88 270 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 SIRT3Q9NTG7 399 aaPredicted RBP8.26□□□□□ -1.09
HDAC6-232ENST00000489053 PNPOQ9NVS9 261 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 PACSIN3Q9UKS6 424 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 FBN2P35556 2912 aa8.26□□□□□ -1.09
HDAC6-232ENST00000489053 CACNA1DQ01668 2161 aa8.25□□□□□ -1.09
HDAC6-232ENST00000489053 NINQ8N4C6 2090 aa8.25□□□□□ -1.09
HDAC6-232ENST00000489053 GOLGA8QA0A0J9YX86 632 aa8.25□□□□□ -1.09
HDAC6-232ENST00000489053 PRSS51A0A1B0GVH4 220 aa8.25□□□□□ -1.09
HDAC6-232ENST00000489053 GOLGA8OA6NCC3 632 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms