RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 CA5BQ9Y2D0 317 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 NPIPA5A0A0B4J1W7 369 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 POM121BA6NF01 834 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 NPIPA7E9PJI5 369 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 SEC14L5O43304 696 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 AKAP8O43823 692 aaKnown RBP16.72■□□□□ 0.27
VIM-206ENST00000487938 OR5F1O95221 314 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 HLA-DPB1P04440 258 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 CA3P07451 260 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 NPIPA8P0DM63 369 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 FZD5Q13467 585 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 MAPK14Q16539 360 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 VASNQ6EMK4 673 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 CXXC5Q7LFL8 322 aaKnown RBP16.72■□□□□ 0.27
VIM-206ENST00000487938 C19orf18Q8NEA5 215 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 OR4K14Q8NGD5 310 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 ENKURQ8TC29 256 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 GAL3ST3Q96A11 431 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 DEPDC7Q96QD5 511 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 PPP1R3EQ9H7J1 279 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 KIR3DX1Q9H7L2 352 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 PLSCR3Q9NRY6 295 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 FBXO34Q9NWN3 711 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 GDE1Q9NZC3 331 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 KCMF1Q9P0J7 381 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 CDH10Q9Y6N8 788 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 USP34Q70CQ2 3546 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 GSAPA4D1B5 854 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 ZNF860A6NHJ4 632 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 TTC36A6NLP5 189 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 RGS13O14921 159 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 HRO43593 1189 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 IGHA1P01876 353 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 ZGLP1P0C6A0 271 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 GDI1P31150 447 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 RGS1Q08116 209 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 ZNF776Q68DI1 518 aaPredicted RBP16.72■□□□□ 0.27
VIM-206ENST00000487938 ZNF322Q6U7Q0 402 aaPredicted RBP16.72■□□□□ 0.27
VIM-206ENST00000487938 TMEM91Q6ZNR0 172 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 PFN4Q8NHR9 129 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 SLC7A6Q92536 515 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 SDF2Q99470 211 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 MTIF3Q9H2K0 278 aaKnown RBP16.72■□□□□ 0.27
VIM-206ENST00000487938 B3GAT2Q9NPZ5 323 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 ATP13A2Q9NQ11 1180 aa16.72■□□□□ 0.27
VIM-206ENST00000487938 PRSS38A1L453 326 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 SYNDIG1LA6NDD5 238 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 P2RX6O15547 441 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 S100A1P23297 94 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 ZNF136P52737 540 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 CD83Q01151 205 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 TNFRSF17Q02223 184 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 ENPP2Q13822 863 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 NDUFA5Q16718 116 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 ARHGAP11BQ3KRB8 267 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 TRIQKQ629K1 86 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 FAM109BQ6ICB4 259 aaPredicted RBP16.71■□□□□ 0.27
VIM-206ENST00000487938 ENPP7Q6UWV6 458 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 WDR88Q6ZMY6 472 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 KIAA1143Q96AT1 154 aaPredicted RBP16.71■□□□□ 0.27
VIM-206ENST00000487938 SNX18Q96RF0 628 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 RPP25Q9BUL9 199 aaKnown RBP16.71■□□□□ 0.27
VIM-206ENST00000487938 OR52D1Q9H346 318 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 SRMSQ9H3Y6 488 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 SFXN1Q9H9B4 322 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 TRPV4Q9HBA0 871 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 OBP2AQ9NY56 170 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 OR6C2Q9NZP2 312 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 ZNF624Q9P2J8 865 aaPredicted RBP16.71■□□□□ 0.27
VIM-206ENST00000487938 SIRT4Q9Y6E7 314 aaPredicted RBP16.71■□□□□ 0.27
VIM-206ENST00000487938 TRANK1O15050 2925 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 CHST10O43529 356 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 KCNJ13O60928 360 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 PSKH1P11801 424 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 MAKP20794 623 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 EVX1P49640 407 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 RPS15AP62244 130 aaKnown RBP16.71■□□□□ 0.27
VIM-206ENST00000487938 QPRTQ15274 297 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 EOGTQ5NDL2 527 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 PAMR1Q6UXH9 720 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 C7orf61Q8IZ16 206 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 DTX3Q8N9I9 347 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 DNAJA4Q8WW22 397 aaPredicted RBP16.71■□□□□ 0.27
VIM-206ENST00000487938 SOSTQ9BQB4 213 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 PRSS27Q9BQR3 290 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 RNF32Q9H0A6 362 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 CACYBPQ9HB71 228 aaKnown RBP16.71■□□□□ 0.27
VIM-206ENST00000487938 ADAP2Q9NPF8 381 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 C20orf141Q9NUB4 165 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 MED17Q9NVC6 651 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 PTGFRNQ9P2B2 879 aa16.71■□□□□ 0.27
VIM-206ENST00000487938 RANBP2P49792 3224 aaKnown RBP16.7■□□□□ 0.26
VIM-206ENST00000487938 FAM172BPA6NC97 362 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 UNC119BA6NIH7 251 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 C12orf71A8MTZ7 269 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 H0Y8X5 98 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 PLRG1O43660 514 aaKnown RBP16.7■□□□□ 0.26
VIM-206ENST00000487938 CTSVO60911 334 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 HMGN1P05114 100 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 CTBP2P56545 445 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms