RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525	C4orf17	Q53FE4	359 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	RUNDC3A	Q59EK9	446 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	SWT1	Q5T5J6	900 aa	Known RBP	4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	INTS11	Q5TA45	600 aa	Known RBP	4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	GKAP1	Q5VSY0	366 aa	Predicted RBP	4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	FCRLB	Q6BAA4	426 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	VASN	Q6EMK4	673 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	TYW3	Q6IPR3	259 aa	Known RBP	4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	ANKRD26P1	Q6NSI1	321 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	AAGAB	Q6PD74	315 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	ENPP6	Q6UWR7	440 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	C5orf46	Q6UWT4	87 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	RPTN	Q6XPR3	784 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	CCDC80	Q76M96	950 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	TRIL	Q7L0X0	811 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	CLECL1	Q8IZS7	167 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	ZNF619	Q8N2I2	560 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	GTPBP8	Q8N3Z3	284 aa	Predicted RBP	4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	TMEM251	Q8N6I4	163 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	WDSUB1	Q8N9V3	476 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	SIMC1	Q8NDZ2	872 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	FAM13C	Q8NE31	585 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	OR52E4	Q8NGH9	312 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	OR9I1	Q8NGQ6	314 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	OR1J4	Q8NGS1	313 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	RFWD2	Q8NHY2	731 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	BBS10	Q8TAM1	723 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	FAM57A	Q8TBR7	257 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	ZPLD1	Q8TCW7	415 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	SLC25A43	Q8WUT9	341 aa	Predicted RBP	4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	MRGPRX4	Q96LA9	322 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	ADO	Q96SZ5	270 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	CGREF1	Q99674	301 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	VKORC1	Q9BQB6	163 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	SPATA5L1	Q9BVQ7	753 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	CCDC106	Q9BWC9	280 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	TBL1XR1	Q9BZK7	514 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	POLR2J2	Q9GZM3	115 aa	Known RBP	4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	POLR2J3	Q9H1A7	115 aa	Known RBP	4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	C1orf21	Q9H246	121 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	SLC38A1	Q9H2H9	487 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	TP63	Q9H3D4	680 aa	Predicted RBP	4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	SERHL2	Q9H4I8	314 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	PIF1	Q9H611	641 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	KAT8	Q9H7Z6	458 aa	Known RBP	4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	METTL7A	Q9H8H3	244 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	C12orf10	Q9HB07	376 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	GID8	Q9NWU2	228 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	SLC25A37	Q9NYZ2	338 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	PLA2G3	Q9NZ20	509 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	KLRF1	Q9NZS2	232 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	ABCD2	Q9UBJ2	740 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	SEC14L3	Q9UDX4	400 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	DCTN4	Q9UJW0	460 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	ADAM21	Q9UKJ8	722 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	ICAM5	Q9UMF0	924 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	NTNG1	Q9Y2I2	539 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	ARL2BP	Q9Y2Y0	163 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	IFT52	Q9Y366	437 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	PCDHB14	Q9Y5E9	798 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	SNX8	Q9Y5X2	465 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	GPC6	Q9Y625	555 aa	Predicted RBP	4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	COL12A1	Q99715	3063 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	MED12	Q93074	2177 aa		4.64	□□□□□ -1.67
HDAC6-223	ENST00000480525	TENM4	Q6N022	2769 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	CDHR4	A6H8M9	788 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	SERINC4	A6NH21	518 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	CD8B2	A6NJW9	211 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	SYT5	O00445	386 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	PRRG2	O14669	202 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	ZNF264	O43296	627 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	HCRTR2	O43614	444 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	NDUFB5	O43674	189 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	CDC40	O60508	579 aa	Known RBP eCLIP	4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	SLC19A2	O60779	497 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	SERPINB7	O75635	380 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	UGT2B17	O75795	530 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	GOSR1	O95249	250 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	UTS2	O95399	124 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	ANGPTL1	O95841	491 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	IGKV1D-16	P01601	117 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	LINGO3	P0C6S8	592 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	PEPD	P12955	493 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	UQCRB	P14927	111 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	HPGD	P15428	266 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	ZNF708	P17019	499 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	NCF2	P19878	526 aa	Predicted RBP	4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	PSMA4	P25789	261 aa	Known RBP	4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	PRKAR1B	P31321	381 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	TIMP3	P35625	211 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	PGM1	P36871	562 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	DCT	P40126	519 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	CDKN2C	P42773	168 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	P2RX1	P51575	399 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	DGKQ	P52824	942 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	DSTN	P60981	165 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	PPIA	P62937	165 aa	Known RBP	4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	CRYZ	Q08257	329 aa	Known RBP	4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	SKP2	Q13309	424 aa		4.63	□□□□□ -1.67
HDAC6-223	ENST00000480525	KRT72	Q14CN4	511 aa		4.63	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms