RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 NTNG2Q96CW9 530 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 SLC35A4Q96G79 324 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 APOPT1Q96IL0 206 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 METTL2AQ96IZ6 378 aaKnown RBP6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 LURAP1Q96LR2 239 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 COL21A1Q96P44 957 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 BBS4Q96RK4 519 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 NODALQ96S42 347 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 TIMP4Q99727 224 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 TRMOQ9BU70 441 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 C12orf65Q9H3J6 166 aaKnown RBP6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 ANKZF1Q9H8Y5 726 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 ANKRA2Q9H9E1 313 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 FOLH1BQ9HBA9 442 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 GALNT9Q9HCQ5 603 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 MYNNQ9NPC7 610 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 MKS1Q9NXB0 559 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 TAS2R9Q9NYW1 312 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 TAS2R7Q9NYW3 318 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 Q9UFV3 132 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 EXO1Q9UQ84 846 aaKnown RBP6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 WBP11Q9Y2W2 641 aaKnown RBP6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 POLR3HQ9Y535 204 aaPredicted RBP6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 PCNX3Q9H6A9 2034 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 MED12LQ86YW9 2145 aa6.19□□□□□ -1.42
CCDC88A-213ENST00000476903 KIAA1549Q9HCM3 1950 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 NUP214P35658 2090 aaPredicted RBP6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 A0A087WV62 115 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 C7orf72A4D263 438 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 MYO1GB0I1T2 1018 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 NPIPB8E9PQR5 432 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 AZIN1O14977 448 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 TSPAN2O60636 221 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 SEC22BO75396 215 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 CBR3O75828 277 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 EPPINO95925 133 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 CHEK2O96017 543 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 ACTL6AO96019 429 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 JUNP05412 331 aaKnown RBP6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 NUDT17P0C025 328 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 CT45A8P0DMV1 189 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 CT45A9P0DMV2 189 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 NEFHP12036 1026 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 CAPN3P20807 821 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 PRPH2P23942 346 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 TIMP3P35625 211 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 PTGDSP41222 190 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 SELENOPP49908 381 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 PNLIPRP2P54317 469 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 VSNL1P62760 191 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 MRPS22P82650 360 aaKnown RBP6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 TLE4Q04727 773 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 IFFO1Q0D2I5 559 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 ZNF155Q12901 538 aaPredicted RBP6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 PCLAFQ15004 111 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 ACSF3Q4G176 576 aaPredicted RBP6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 EIPR1Q53HC9 387 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 CT45A2Q5DJT8 189 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 CLEC6AQ6EIG7 209 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 VASNQ6EMK4 673 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 FAM71E1Q6IPT2 247 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 TMEM107Q6UX40 140 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 RNF165Q6ZSG1 346 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 LARP4Q71RC2 724 aaKnown RBP eCLIP6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 WDR53Q7Z5U6 358 aaPredicted RBP6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 TRABD2AQ86V40 505 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 LACC1Q8IV20 430 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 SLC44A2Q8IWA5 706 aaPredicted RBP6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 FAM83FQ8NEG4 500 aaPredicted RBP6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 OR2W6PQ8NHA6 318 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 OR14L1PQ8NHC6 308 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 ABTB1Q969K4 478 aaPredicted RBP6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 LRRC46Q96FV0 321 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 VSTM2LQ96N03 204 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 ADOQ96SZ5 270 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 LRTM1Q9HBL6 345 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 MCCC2Q9HCC0 563 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 SERHLQ9NQF3 203 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 DDX18Q9NVP1 670 aaKnown RBP6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 C1orf109Q9NX04 203 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 KCNN3Q9UGI6 736 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 MAPRE3Q9UPY8 281 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 CAMK2AQ9UQM7 478 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 TMA7Q9Y2S6 64 aaKnown RBP6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 SLC6A5Q9Y345 797 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 OR10H1Q9Y4A9 318 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 CCL27Q9Y4X3 112 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 WIF1Q9Y5W5 379 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 CSMD2Q7Z408 3487 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 MPDZO75970 2070 aa6.18□□□□□ -1.42
CCDC88A-213ENST00000476903 PDZD2O15018 2839 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 ANKRD17O75179 2603 aaKnown RBP6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 TACC2O95359 2948 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 UPK1AO00322 258 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 PLOD2O00469 737 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 DVL2O14641 736 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 NPHS1O60500 1241 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 IFI6P09912 130 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 GRK2P25098 689 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms