RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 ACBD3Q9H3P7 528 aa16.72■□□□□ 0.27
COL7A1-209ENST00000474432 PIGMQ9H3S5 423 aa16.72■□□□□ 0.27
COL7A1-209ENST00000474432 CXorf36Q9H7Y0 433 aa16.72■□□□□ 0.27
COL7A1-209ENST00000474432 CCM2LQ9NUG4 571 aaPredicted RBP16.72■□□□□ 0.27
COL7A1-209ENST00000474432 PACSIN3Q9UKS6 424 aa16.72■□□□□ 0.27
COL7A1-209ENST00000474432 C2CD3Q4AC94 2353 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 A0A1W2PRB8 838 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 TMEM114B3SHH9 223 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 H3BML4 177 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 SEC14L5O43304 696 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 CGAP01215 116 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 CRHP06850 196 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 HPCAL1P37235 193 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 SERPINB4P48594 390 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 CD226Q15762 336 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 ATP6AP1LQ52LC2 224 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 SZRD1Q7Z422 152 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 BTLAQ7Z6A9 289 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 MEIOBQ8N635 442 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 METTL25Q8N6Q8 603 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 GATSQ8NAP1 163 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 FNDC9Q8TBE3 224 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 OR5P2Q8WZ92 322 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 PKNOX2Q96KN3 472 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 FOXC2Q99958 501 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 PIGQQ9BRB3 760 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 PINK1Q9BXM7 581 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 C20orf27Q9GZN8 174 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 PLEKHF2Q9H8W4 249 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 RNF122Q9H9V4 155 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 ZCCHC3Q9NUD5 404 aaKnown RBP16.71■□□□□ 0.27
COL7A1-209ENST00000474432 GPATCH2Q9NW75 528 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 KCNE3Q9Y6H6 103 aa16.71■□□□□ 0.27
COL7A1-209ENST00000474432 ZNF469Q96JG9 3925 aaPredicted RBP16.71■□□□□ 0.27
COL7A1-209ENST00000474432 MSTNO14793 375 aa16.7■□□□□ 0.26
COL7A1-209ENST00000474432 NDUFB5O43674 189 aa16.7■□□□□ 0.26
COL7A1-209ENST00000474432 ALOX5P09917 674 aa16.7■□□□□ 0.26
COL7A1-209ENST00000474432 MAPK1P28482 360 aa16.7■□□□□ 0.26
COL7A1-209ENST00000474432 EEF1A1P68104 462 aaKnown RBP16.7■□□□□ 0.26
COL7A1-209ENST00000474432 MPP2Q14168 576 aa16.7■□□□□ 0.26
COL7A1-209ENST00000474432 LASP1Q14847 261 aaKnown RBP16.7■□□□□ 0.26
COL7A1-209ENST00000474432 TNFAIP8L3Q5GJ75 292 aa16.7■□□□□ 0.26
COL7A1-209ENST00000474432 EEF1A1P5Q5VTE0 462 aa16.7■□□□□ 0.26
COL7A1-209ENST00000474432 ZNF474Q6S9Z5 364 aaPredicted RBP16.7■□□□□ 0.26
COL7A1-209ENST00000474432 POC1BQ8TC44 478 aa16.7■□□□□ 0.26
COL7A1-209ENST00000474432 CDS1Q92903 461 aa16.7■□□□□ 0.26
COL7A1-209ENST00000474432 ADGRG7Q96K78 797 aa16.7■□□□□ 0.26
COL7A1-209ENST00000474432 DACH2Q96NX9 599 aa16.7■□□□□ 0.26
COL7A1-209ENST00000474432 BTBD2Q9BX70 525 aa16.7■□□□□ 0.26
COL7A1-209ENST00000474432 PARD6BQ9BYG5 372 aa16.7■□□□□ 0.26
COL7A1-209ENST00000474432 PIGUQ9H490 435 aa16.7■□□□□ 0.26
COL7A1-209ENST00000474432 UBQLN4Q9NRR5 601 aa16.7■□□□□ 0.26
COL7A1-209ENST00000474432 DUSP22Q9NRW4 184 aa16.7■□□□□ 0.26
COL7A1-209ENST00000474432 GIN1Q9NXP7 522 aa16.7■□□□□ 0.26
COL7A1-209ENST00000474432 VDAC3Q9Y277 283 aa16.7■□□□□ 0.26
COL7A1-209ENST00000474432 PLEKHA6Q9Y2H5 1048 aa16.7■□□□□ 0.26
COL7A1-209ENST00000474432 ZNF175Q9Y473 711 aa16.7■□□□□ 0.26
COL7A1-209ENST00000474432 AP4B1Q9Y6B7 739 aa16.7■□□□□ 0.26
COL7A1-209ENST00000474432 ACANP16112 2415 aa16.7■□□□□ 0.26
COL7A1-209ENST00000474432 OIP5O43482 229 aa16.69■□□□□ 0.26
COL7A1-209ENST00000474432 AQP8O94778 261 aa16.69■□□□□ 0.26
COL7A1-209ENST00000474432 C6orf47O95873 294 aa16.69■□□□□ 0.26
COL7A1-209ENST00000474432 HRGP04196 525 aa16.69■□□□□ 0.26
COL7A1-209ENST00000474432 DHRS4L1P0CG22 281 aa16.69■□□□□ 0.26
COL7A1-209ENST00000474432 G6PDP11413 515 aa16.69■□□□□ 0.26
COL7A1-209ENST00000474432 CD1EP15812 388 aa16.69■□□□□ 0.26
COL7A1-209ENST00000474432 LCN1P31025 176 aa16.69■□□□□ 0.26
COL7A1-209ENST00000474432 RPL3P39023 403 aaKnown RBP16.69■□□□□ 0.26
COL7A1-209ENST00000474432 PCYT1AP49585 367 aa16.69■□□□□ 0.26
COL7A1-209ENST00000474432 PRIM2P49643 509 aa16.69■□□□□ 0.26
COL7A1-209ENST00000474432 EEFSECP57772 596 aaKnown RBP16.69■□□□□ 0.26
COL7A1-209ENST00000474432 C21orf58P58505 322 aa16.69■□□□□ 0.26
COL7A1-209ENST00000474432 OCRLQ01968 901 aa16.69■□□□□ 0.26
COL7A1-209ENST00000474432 FAM27E3Q08E93 113 aa16.69■□□□□ 0.26
COL7A1-209ENST00000474432 CTU2Q2VPK5 515 aaKnown RBP16.69■□□□□ 0.26
COL7A1-209ENST00000474432 CPTPQ5TA50 214 aa16.69■□□□□ 0.26
COL7A1-209ENST00000474432 OR2A2Q6IF42 318 aa16.69■□□□□ 0.26
COL7A1-209ENST00000474432 CDC73Q6P1J9 531 aa16.69■□□□□ 0.26
COL7A1-209ENST00000474432 P4HA3Q7Z4N8 544 aa16.69■□□□□ 0.26
COL7A1-209ENST00000474432 NUDCD3Q8IVD9 361 aa16.69■□□□□ 0.26
COL7A1-209ENST00000474432 GTPBP8Q8N3Z3 284 aaPredicted RBP16.69■□□□□ 0.26
COL7A1-209ENST00000474432 COX18Q8N8Q8 333 aa16.69■□□□□ 0.26
COL7A1-209ENST00000474432 FNDC5Q8NAU1 212 aa16.69■□□□□ 0.26
COL7A1-209ENST00000474432 STACQ99469 402 aa16.69■□□□□ 0.26
COL7A1-209ENST00000474432 A0A1W2PQD3 144 aa16.68■□□□□ 0.26
COL7A1-209ENST00000474432 C7orf72A4D263 438 aa16.68■□□□□ 0.26
COL7A1-209ENST00000474432 SH3D21A4FU49 640 aa16.68■□□□□ 0.26
COL7A1-209ENST00000474432 CTIFO43310 598 aaKnown RBP16.68■□□□□ 0.26
COL7A1-209ENST00000474432 ZNF500O60304 480 aaPredicted RBP16.68■□□□□ 0.26
COL7A1-209ENST00000474432 ZNF17P17021 662 aa16.68■□□□□ 0.26
COL7A1-209ENST00000474432 SLC6A8P48029 635 aa16.68■□□□□ 0.26
COL7A1-209ENST00000474432 CPA2P48052 419 aa16.68■□□□□ 0.26
COL7A1-209ENST00000474432 CCT3P49368 545 aaKnown RBP16.68■□□□□ 0.26
COL7A1-209ENST00000474432 POU6F2P78424 691 aaPredicted RBP16.68■□□□□ 0.26
COL7A1-209ENST00000474432 EMX2Q04743 252 aa16.68■□□□□ 0.26
COL7A1-209ENST00000474432 PON3Q15166 354 aa16.68■□□□□ 0.26
COL7A1-209ENST00000474432 PLPPR5Q32ZL2 321 aa16.68■□□□□ 0.26
COL7A1-209ENST00000474432 KRT71Q3SY84 523 aa16.68■□□□□ 0.26
COL7A1-209ENST00000474432 CHMP1BQ7LBR1 199 aa16.68■□□□□ 0.26
COL7A1-209ENST00000474432 CAMKMTQ7Z624 323 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms