RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 FAM74A7A6NL05 159 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 E7ENQ6 273 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 SLC17A2O00624 439 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 DUX1O43812 170 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 JAK2O60674 1132 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 TSC22D2O75157 780 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 PEX11AO75192 247 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 SLC2A10O95528 541 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 CHRNA1P02708 482 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 SLC35E2P0CK97 266 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 CT45A10P0DMU9 189 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 ANXA3P12429 323 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 KRT13P13646 458 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 PGAM2P15259 253 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 ACVR1BP36896 505 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 ACAA2P42765 397 aaKnown RBP2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 MAGEA9P43362 315 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 EMDP50402 254 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 ERVPABLB-1P60509 514 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 OSTNP61366 133 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 NUCB2P80303 420 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 PUDPQ08623 228 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 OVGP1Q12889 678 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 CAMK4Q16566 473 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 CYP51A1Q16850 503 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 FAM74A3Q4VXF1 159 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 RIPPLY2Q5TAB7 128 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 MEDAGQ5VYS4 303 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 ZNF57Q68EA5 555 aaPredicted RBP2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 LANCL3Q6ZV70 420 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 HSD11B1LQ7Z5J1 315 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 CENPLQ8N0S6 344 aaPredicted RBP2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 BPIFB2Q8N4F0 458 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 FADS6Q8N9I5 356 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 OR5AU1Q8NGC0 362 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 ADAMTS16Q8TE57 1224 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 TFB1MQ8WVM0 346 aaKnown RBP2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 SYAP1Q96A49 352 aaPredicted RBP2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 DTNBP1Q96EV8 351 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 C4orf36Q96KX1 117 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 MAGEB18Q96M61 343 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 CASD1Q96PB1 797 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 CCT8L2Q96SF2 557 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 GPA33Q99795 319 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 ZNF416Q9BWM5 594 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 TM2D1Q9BX74 207 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 NFKBIZQ9BYH8 718 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 POLR3FQ9H1D9 316 aaPredicted RBP2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 OPN3Q9H1Y3 402 aaPredicted RBP2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 DHX33Q9H6R0 707 aaKnown RBP2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 POLD4Q9HCU8 107 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 PALMDQ9NP74 551 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 RDH8Q9NYR8 311 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 TMOD2Q9NZR1 351 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 CGNQ9P2M7 1197 aaKnown RBP2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 SLC2A6Q9UGQ3 507 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 LAMP5Q9UJQ1 280 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 BLOC1S6Q9UL45 172 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 ATP6V0A2Q9Y487 856 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 KIF3AQ9Y496 699 aa2.15□□□□□ -2.07
CCDC88A-212ENST00000474059 ESYT2A0FGR8 921 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 FRG2CA6NGY1 282 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 NDC80O14777 642 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 MAPK13O15264 365 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 EFNA2O43921 213 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 NOL3O60936 208 aaKnown RBP2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 STX11O75558 287 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 NOL4O94818 638 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 ANP32DO95626 131 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 CSF2P04141 144 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 PCCBP05166 539 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 ASNSP08243 561 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 TSPY4P0CV99 314 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 TSPY10P0CW01 314 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 HSPA5P11021 654 aaKnown RBP2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 H2AFXP16104 143 aaPredicted RBP2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 FASP25445 335 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 PTBP1P26599 531 aaKnown RBP eCLIP2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 HTR2AP28223 471 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 KIF5BP33176 963 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 NOVA1P51513 510 aaKnown RBP2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 HSD17B7P56937 341 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 CXCL6P80162 114 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 ELP6Q0PNE2 266 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 ZNF154Q13106 437 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 CHI3L2Q15782 390 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 USH1GQ495M9 461 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 FAM120AOSQ5T036 256 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 NCR3LG1Q68D85 454 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 CGB2Q6NT52 195 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 ZNF525Q8N782 197 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 OR10T2Q8NGX3 314 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 GTSF1Q8WW33 167 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 FEM1AQ9BSK4 669 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 GSDMCQ9BYG8 508 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 GALPQ9UBC7 116 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 CHRNA9Q9UGM1 479 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 CLEC4EQ9ULY5 219 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 GMPPBQ9Y5P6 360 aa2.14□□□□□ -2.07
CCDC88A-212ENST00000474059 CFAP65Q6ZU64 1925 aaKnown RBP2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms