RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 PGM2Q96G03 612 aa16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 NPAS1Q99742 590 aa16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 OPN3Q9H1Y3 402 aaPredicted RBP16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 SIRT3Q9NTG7 399 aaPredicted RBP16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 FBXO34Q9NWN3 711 aa16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 LGALS13Q9UHV8 139 aa16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 TRAF6Q9Y4K3 522 aa16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 AP4B1Q9Y6B7 739 aa16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 NUP214P35658 2090 aaPredicted RBP16.9■□□□□ 0.3
CCDC88B-206ENST00000473405 SIAH2O43255 324 aa16.9■□□□□ 0.3
CCDC88B-206ENST00000473405 KCNK2O95069 426 aa16.9■□□□□ 0.3
CCDC88B-206ENST00000473405 CGAP01215 116 aa16.9■□□□□ 0.3
CCDC88B-206ENST00000473405 ZNF17P17021 662 aa16.9■□□□□ 0.3
CCDC88B-206ENST00000473405 ASMTP46597 345 aa16.9■□□□□ 0.3
CCDC88B-206ENST00000473405 PCYT1AP49585 367 aa16.9■□□□□ 0.3
CCDC88B-206ENST00000473405 SIRPAP78324 504 aa16.9■□□□□ 0.3
CCDC88B-206ENST00000473405 OCRLQ01968 901 aa16.9■□□□□ 0.3
CCDC88B-206ENST00000473405 FOXD4Q12950 439 aaPredicted RBP16.9■□□□□ 0.3
CCDC88B-206ENST00000473405 DEFB113Q30KQ7 82 aa16.9■□□□□ 0.3
CCDC88B-206ENST00000473405 FIGNL1Q6PIW4 674 aa16.9■□□□□ 0.3
CCDC88B-206ENST00000473405 ZCCHC23Q6ZST2 131 aa16.9■□□□□ 0.3
CCDC88B-206ENST00000473405 FAM120BQ96EK7 910 aaKnown RBP16.9■□□□□ 0.3
CCDC88B-206ENST00000473405 C16orf58Q96GQ5 468 aa16.9■□□□□ 0.3
CCDC88B-206ENST00000473405 KLHDC3Q9BQ90 382 aa16.9■□□□□ 0.3
CCDC88B-206ENST00000473405 DLL4Q9NR61 685 aa16.9■□□□□ 0.3
CCDC88B-206ENST00000473405 VDAC3Q9Y277 283 aa16.9■□□□□ 0.3
CCDC88B-206ENST00000473405 RAI1Q7Z5J4 1906 aaPredicted RBP16.9■□□□□ 0.3
CCDC88B-206ENST00000473405 SCAMP2O15127 329 aaKnown RBP16.89■□□□□ 0.29
CCDC88B-206ENST00000473405 EMC8O43402 210 aa16.89■□□□□ 0.29
CCDC88B-206ENST00000473405 SPAG7O75391 227 aa16.89■□□□□ 0.29
CCDC88B-206ENST00000473405 AQP8O94778 261 aa16.89■□□□□ 0.29
CCDC88B-206ENST00000473405 TBXA2RP21731 343 aa16.89■□□□□ 0.29
CCDC88B-206ENST00000473405 CD79BP40259 229 aa16.89■□□□□ 0.29
CCDC88B-206ENST00000473405 VSNL1P62760 191 aa16.89■□□□□ 0.29
CCDC88B-206ENST00000473405 PPP2R2AP63151 447 aa16.89■□□□□ 0.29
CCDC88B-206ENST00000473405 ADAM8P78325 824 aa16.89■□□□□ 0.29
CCDC88B-206ENST00000473405 KEAP1Q14145 624 aa16.89■□□□□ 0.29
CCDC88B-206ENST00000473405 MLC1Q15049 377 aa16.89■□□□□ 0.29
CCDC88B-206ENST00000473405 GATSQ8NAP1 163 aa16.89■□□□□ 0.29
CCDC88B-206ENST00000473405 OR7A2PQ8NGA2 310 aa16.89■□□□□ 0.29
CCDC88B-206ENST00000473405 AGR3Q8TD06 166 aa16.89■□□□□ 0.29
CCDC88B-206ENST00000473405 C3orf30Q96M34 536 aa16.89■□□□□ 0.29
CCDC88B-206ENST00000473405 NDRG3Q9UGV2 375 aa16.89■□□□□ 0.29
CCDC88B-206ENST00000473405 ATP6V1HQ9UI12 483 aa16.89■□□□□ 0.29
CCDC88B-206ENST00000473405 C7orf72A4D263 438 aa16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 DEFB108AA8MXU0 73 aa16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 NDUFB5O43674 189 aa16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 DIAPH2O60879 1101 aa16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 CD53P19397 219 aa16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 PSMA4P25789 261 aaKnown RBP16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 UGT2B10P36537 528 aa16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 HPCAL1P37235 193 aa16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 SLC6A8P48029 635 aa16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 PTGR1Q14914 329 aa16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 CD226Q15762 336 aa16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 PLPPR5Q32ZL2 321 aa16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 CCNJQ5T5M9 372 aa16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 ZCCHC12Q6PEW1 402 aa16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 R3HCC1LQ7Z5L2 792 aaKnown RBP16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 GTPBP8Q8N3Z3 284 aaPredicted RBP16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 COX18Q8N8Q8 333 aa16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 OR6Y1Q8NGX8 325 aa16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 TCP10LQ8TDR4 215 aa16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 ADGRG7Q96K78 797 aa16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 WFIKKN1Q96NZ8 548 aa16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 EML4Q9HC35 981 aaKnown RBP16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 KLHL28Q9NXS3 571 aa16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 ROS1P08922 2347 aa16.88■□□□□ 0.29
CCDC88B-206ENST00000473405 TLN2Q9Y4G6 2542 aa16.87■□□□□ 0.29
CCDC88B-206ENST00000473405 A0A087WZY1 265 aa16.87■□□□□ 0.29
CCDC88B-206ENST00000473405 A0A1W2PRB8 838 aa16.87■□□□□ 0.29
CCDC88B-206ENST00000473405 CTIFO43310 598 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-206ENST00000473405 HMGN2P05204 90 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-206ENST00000473405 ALOX5P09917 674 aa16.87■□□□□ 0.29
CCDC88B-206ENST00000473405 CD8BP10966 210 aa16.87■□□□□ 0.29
CCDC88B-206ENST00000473405 LAMP1P11279 417 aa16.87■□□□□ 0.29
CCDC88B-206ENST00000473405 FCGR2AP12318 317 aa16.87■□□□□ 0.29
CCDC88B-206ENST00000473405 LCN1P31025 176 aa16.87■□□□□ 0.29
CCDC88B-206ENST00000473405 RPS3AP61247 264 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-206ENST00000473405 CTU2Q2VPK5 515 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-206ENST00000473405 LRIG3Q6UXM1 1119 aa16.87■□□□□ 0.29
CCDC88B-206ENST00000473405 KRTAP1-3Q8IUG1 177 aa16.87■□□□□ 0.29
CCDC88B-206ENST00000473405 NUDT8Q8WV74 236 aa16.87■□□□□ 0.29
CCDC88B-206ENST00000473405 JADE3Q92613 823 aa16.87■□□□□ 0.29
CCDC88B-206ENST00000473405 PPP3R2Q96LZ3 170 aa16.87■□□□□ 0.29
CCDC88B-206ENST00000473405 C1orf50Q9BV19 199 aa16.87■□□□□ 0.29
CCDC88B-206ENST00000473405 UBQLN4Q9NRR5 601 aa16.87■□□□□ 0.29
CCDC88B-206ENST00000473405 ZCCHC3Q9NUD5 404 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-206ENST00000473405 MED17Q9NVC6 651 aa16.87■□□□□ 0.29
CCDC88B-206ENST00000473405 C6orf203Q9P0P8 240 aaPredicted RBP16.87■□□□□ 0.29
CCDC88B-206ENST00000473405 HEATR5AQ86XA9 2040 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 TMEM114B3SHH9 223 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 EIF1AYO14602 144 aaKnown RBP16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 PEX11AO75192 247 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 CREB1P16220 341 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 SERPINB4P48594 390 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 FGFBP1Q14512 234 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 LASP1Q14847 261 aaKnown RBP16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 C6orf136Q5SQH8 315 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 C22orf34Q6ZV56 151 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms