RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	SAMD4A	Q9UPU9	718 aa	Known RBP	2.83	□□□□□ -1.96
PTCD3-209	ENST00000472044	ANGPT2	O15123	496 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	NOL3	O60936	208 aa	Known RBP	2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	CABYR	O75952	493 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	NOL4	O94818	638 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	CSF2	P04141	144 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	HBQ1	P09105	142 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	CLU	P10909	449 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	ZP3	P21754	424 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	IL2RG	P31785	369 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	NOVA1	P51513	510 aa	Known RBP	2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	KRTAP10-5	P60370	271 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	RPL32	P62910	135 aa	Known RBP	2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	RPL8	P62917	257 aa	Known RBP	2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	NTHL1	P78549	312 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	BDH1	Q02338	343 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	CSTF1	Q05048	431 aa	Known RBP	2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	PRR30	Q53SZ7	412 aa	Predicted RBP	2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	CELF3	Q5SZQ8	465 aa	Known RBP	2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	SCYL2	Q6P3W7	929 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	APOBEC3F	Q8IUX4	373 aa	Known RBP	2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	GPR65	Q8IYL9	337 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	CD177	Q8N6Q3	437 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	OR13F1	Q8NGS4	319 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	OR10T2	Q8NGX3	314 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	VSIG2	Q96IQ7	327 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	VPS39	Q96JC1	886 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	TSGA13	Q96PP4	275 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	C19orf24	Q9BVV8	132 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	DEFB126	Q9BYW3	111 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	GLT8D2	Q9H1C3	349 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	MIEF1	Q9NQG6	463 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	PNO1	Q9NRX1	252 aa	Known RBP	2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	APOBEC3B	Q9UH17	382 aa	Known RBP	2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	SMC3	Q9UQE7	1217 aa		2.82	□□□□□ -1.96
PTCD3-209	ENST00000472044	IGLV8-61	A0A075B6I0	122 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	IGLV3-10	A0A075B6K4	115 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	SAGE2P	A6NJ88	616 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	FAM74A7	A6NL05	159 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044		E9PLD3	99 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044		K7ENP7	123 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	NDC80	O14777	642 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	PEX11A	O75192	247 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	IDH1	O75874	414 aa	Known RBP	2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	B3GAT3	O94766	335 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	MBD3	O95983	291 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	IGF1	P05019	195 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	ASNS	P08243	561 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044		P0C879	139 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	ATP5A1	P25705	553 aa	Known RBP	2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	NF2	P35240	595 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	VLDLR	P98155	873 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	KIAA0040	Q15053	153 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	CHI3L2	Q15782	390 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	TMEM52B	Q4KMG9	183 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	FAM74A3	Q4VXF1	159 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	LCE3C	Q5T5A8	94 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	OR8G2P	Q6IF36	304 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	GRAMD2A	Q8IUY3	354 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	SPAG16	Q8N0X2	631 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	ARNTL2	Q8WYA1	636 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	MYLPF	Q96A32	169 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	SYAP1	Q96A49	352 aa	Predicted RBP	2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	FAF2	Q96CS3	445 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	SDSL	Q96GA7	329 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	KIR2DL4	Q99706	377 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	CITED1	Q99966	193 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	RHOJ	Q9H4E5	214 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	LAMP5	Q9UJQ1	280 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	ANAPC7	Q9UJX3	599 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	TP53TG3	Q9ULZ0	132 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	VSIG4	Q9Y279	399 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	SF3B1	O75533	1304 aa	Known RBP eCLIP	2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	ANKRD30B	Q9BXX2	1392 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	ATP10D	Q9P241	1426 aa		2.81	□□□□□ -1.96
PTCD3-209	ENST00000472044	GSAP	A4D1B5	854 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	OR6C65	A6NJZ3	312 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	SCRG1	O75711	98 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	GUCA1C	O95843	209 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	IGKV3-15	P01624	115 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	GCFC2	P16383	781 aa	Known RBP	2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	TPSB2	P20231	275 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	TBXA2R	P21731	343 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	PTBP1	P26599	531 aa	Known RBP eCLIP	2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	PRKAR2B	P31323	418 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	GNPDA1	P46926	289 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	RIPPLY3	P57055	190 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	IGLV3-21	P80748	117 aa	Predicted RBP	2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	RGS1	Q08116	209 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	RIPPLY1	Q0D2K3	151 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	OVGP1	Q12889	678 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	TPSAB1	Q15661	275 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	TATDN3	Q17R31	274 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	SBK1	Q52WX2	424 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	RABGAP1L	Q5R372	815 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	RSBN1	Q5VWQ0	802 aa	Predicted RBP	2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	NCR3LG1	Q68D85	454 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	ZBED8	Q8IZ13	594 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	MCOLN2	Q8IZK6	566 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	CADM2	Q8N3J6	435 aa		2.8	□□□□□ -1.96

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