RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 PPIBP23284 216 aaKnown RBP16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 MSX1P28360 303 aa16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 DCAF7P61962 342 aa16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 HBA1P69905 142 aa16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 MRPS35P82673 323 aaKnown RBP16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 DUSP2Q05923 314 aa16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 GTDC1Q4AE62 458 aa16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 SAMD4BQ5PRF9 694 aaKnown RBP16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 MSRB3Q8IXL7 192 aa16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 ULK2Q8IYT8 1036 aa16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 CCDC116Q8IYX3 515 aa16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 PSMA8Q8TAA3 256 aa16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 UTP4Q969X6 686 aaKnown RBP16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 ZNF681Q96N22 645 aa16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 AMDHD1Q96NU7 426 aa16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 GNRHR2Q96P88 292 aa16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 CPPED1Q9BRF8 314 aaPredicted RBP16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 ZNF639Q9UID6 485 aa16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 L3MBTL1Q9Y468 752 aa16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 PCDHB14Q9Y5E9 798 aa16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 PCDHGB3Q9Y5G1 929 aa16.44■□□□□ 0.22
SQSTM1-204ENST00000453046 A0A0G2JNJ9 132 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 ANKRD65E5RJM6 399 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 ACOX3O15254 700 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 BCAS2O75934 225 aaPredicted RBP16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 SLITRK5O94991 958 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 CBX7O95931 251 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 IFI6P09912 130 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 EFNA1P20827 205 aaPredicted RBP16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 NCBP2P52298 156 aaKnown RBP eCLIP16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 MANFP55145 182 aaKnown RBP16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 TFF3Q07654 80 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 GAB1Q13480 694 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 RUNDC3AQ59EK9 446 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 NANOGP8Q6NSW7 305 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 PGM2L1Q6PCE3 622 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 NUP54Q7Z3B4 507 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 SLC15A3Q8IY34 581 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 ACBD4Q8NC06 268 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 SIMC1Q8NDZ2 872 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 OR1J4Q8NGS1 313 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 CTHRC1Q96CG8 243 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 OMA1Q96E52 524 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 TMEM41AQ96HV5 264 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 CDRT15Q96T59 188 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 GLIPR2Q9H4G4 154 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 NANOGQ9H9S0 305 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 MCCC2Q9HCC0 563 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 NPDC1Q9NQX5 325 aaPredicted RBP16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 ADA2Q9NZK5 511 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 KLRF1Q9NZS2 232 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 Q9UFV3 132 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 CORO2BQ9UQ03 480 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 C15orf41Q9Y2V0 281 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 TACC2O95359 2948 aa16.43■□□□□ 0.22
SQSTM1-204ENST00000453046 NME4O00746 187 aa16.42■□□□□ 0.22
SQSTM1-204ENST00000453046 MPIP34949 423 aa16.42■□□□□ 0.22
SQSTM1-204ENST00000453046 ADH7P40394 386 aa16.42■□□□□ 0.22
SQSTM1-204ENST00000453046 PPICP45877 212 aa16.42■□□□□ 0.22
SQSTM1-204ENST00000453046 CDK9P50750 372 aaKnown RBP16.42■□□□□ 0.22
SQSTM1-204ENST00000453046 CORO7P57737 925 aa16.42■□□□□ 0.22
SQSTM1-204ENST00000453046 EEFSECP57772 596 aaKnown RBP16.42■□□□□ 0.22
SQSTM1-204ENST00000453046 HSPB3Q12988 150 aa16.42■□□□□ 0.22
SQSTM1-204ENST00000453046 RIPPLY2Q5TAB7 128 aa16.42■□□□□ 0.22
SQSTM1-204ENST00000453046 ZNF621Q6ZSS3 439 aa16.42■□□□□ 0.22
SQSTM1-204ENST00000453046 WDR53Q7Z5U6 358 aaPredicted RBP16.42■□□□□ 0.22
SQSTM1-204ENST00000453046 SFXN5Q8TD22 340 aa16.42■□□□□ 0.22
SQSTM1-204ENST00000453046 TREX2Q9BQ50 279 aaPredicted RBP16.42■□□□□ 0.22
SQSTM1-204ENST00000453046 SLC6A13Q9NSD5 602 aa16.42■□□□□ 0.22
SQSTM1-204ENST00000453046 SIRT3Q9NTG7 399 aaPredicted RBP16.42■□□□□ 0.22
SQSTM1-204ENST00000453046 CMTM6Q9NX76 183 aa16.42■□□□□ 0.22
SQSTM1-204ENST00000453046 ITGB1BP2Q9UKP3 347 aa16.42■□□□□ 0.22
SQSTM1-204ENST00000453046 RRP15Q9Y3B9 282 aaKnown RBP16.42■□□□□ 0.22
SQSTM1-204ENST00000453046 INTS1Q8N201 2190 aaKnown RBP16.42■□□□□ 0.22
SQSTM1-204ENST00000453046 AHRRA9YTQ3 701 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 REM1O75628 298 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 HPNP05981 417 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 GSNP06396 782 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 HSD17B1P14061 328 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 IGFBP2P18065 325 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 DRD5P21918 477 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 UQCRC2P22695 453 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 SOAT1P35610 550 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 KRT20P35900 424 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 EMDP50402 254 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 MTPNP58546 118 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 SF3B4Q15427 424 aaKnown RBP eCLIP16.41■□□□□ 0.224e-17■■■■■ 33.5
SQSTM1-204ENST00000453046 ZNF628Q5EBL2 1059 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 RABL3Q5HYI8 236 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 FNDC7Q5VTL7 733 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 TIGD3Q6B0B8 471 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 SLC30A6Q6NXT4 461 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 ANGPTL8Q6UXH0 198 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 ZNF551Q7Z340 670 aaPredicted RBP16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 PM20D2Q8IYS1 436 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 OR9A2Q8NGT5 310 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 ZNF675Q8TD23 568 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 ZFP90Q8TF47 636 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 KAT2AQ92830 837 aa16.41■□□□□ 0.22
SQSTM1-204ENST00000453046 HGDQ93099 445 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms