RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SPINT3P49223 89 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 CAV2P51636 162 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 ATP1B3P54709 279 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 DCAF7P61962 342 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 UGT8Q16880 541 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 CLVS2Q5SYC1 327 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 TRMT10BQ6PF06 316 aaKnown RBP6.49□□□□□ -1.37
SCN1A-204ENST00000423058 OPN5Q6U736 354 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 TRIM74Q86UV6 250 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 NAA40Q86UY6 237 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 SLC22A16Q86VW1 577 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 RANBP9Q96S59 729 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 NOCTQ9UK39 431 aaKnown RBP6.49□□□□□ -1.37
SCN1A-204ENST00000423058 C4orf47A7E2U8 309 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 MEN1O00255 615 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 MRPL33O75394 65 aaKnown RBP6.49□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF888P0CJ79 500 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-204ENST00000423058 LPAL2Q16609 132 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 CCDC58Q4VC31 144 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 CTSL3PQ5NE16 218 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 SBSNQ6UWP8 590 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 BBS1Q8NFJ9 593 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 DMBX1Q8NFW5 382 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 OR6T1Q8NGN1 323 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 OR2T27Q8NH04 317 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 HUS1BQ8NHY5 278 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 BIRC7Q96CA5 298 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 RHCGQ9UBD6 479 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 SCN11AQ9UI33 1791 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 SLC35F4A4IF30 521 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 HTRA2O43464 458 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-204ENST00000423058 MMP12P39900 470 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 MAP2K4P45985 399 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 GPR4P46093 362 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 HOXA1P49639 335 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-204ENST00000423058 MRPS21P82921 87 aaKnown RBP6.49□□□□□ -1.37
SCN1A-204ENST00000423058 MPEG1Q2M385 716 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 GARNL3Q5VVW2 1013 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF529Q6P280 563 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 CFAP77Q6ZQR2 320 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 MMP21Q8N119 569 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 AGBL5Q8NDL9 886 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 IL17RDQ8NFM7 739 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 CANT1Q8WVQ1 401 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 HHIPQ96QV1 700 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF587Q96SQ5 575 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-204ENST00000423058 RTP3Q9BQQ7 232 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 HRASLSQ9HDD0 168 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 POLHQ9Y253 713 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 SLC22A7Q9Y694 548 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 NUP188Q5SRE5 1749 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 RGS11O94810 467 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 GLCEO94923 617 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 HPRP00739 348 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 TFPTP0C1Z6 253 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 CRHBPP24387 322 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 GATMP50440 423 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 TAS2R46P59540 309 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 RAC1P63000 192 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 KANK2Q63ZY3 851 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 MISPQ8IVT2 679 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 TEX19Q8NA77 164 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 GOT1L1Q8NHS2 421 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-204ENST00000423058 DNAJA3Q96EY1 480 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 ST6GALNAC5Q9BVH7 336 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 ACOT13Q9NPJ3 140 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 PLCXD1Q9NUJ7 323 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 CA5BQ9Y2D0 317 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 A0A1W2PQ09 198 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 GPR39O43194 453 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 ZIC2O95409 532 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-204ENST00000423058 GSTP1P09211 210 aaKnown RBP6.48□□□□□ -1.37
SCN1A-204ENST00000423058 SNTB2Q13425 540 aaKnown RBP6.48□□□□□ -1.37
SCN1A-204ENST00000423058 GPR50Q13585 617 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 OR7A5Q15622 319 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF684Q5T5D7 378 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 SULF2Q8IWU5 870 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 ACOT11Q8WXI4 607 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-204ENST00000423058 SGK3Q96BR1 496 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 BSCL2Q96G97 398 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-204ENST00000423058 TCTN2Q96GX1 697 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 ALOXE3Q9BYJ1 711 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 TEX10Q9NXF1 929 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-204ENST00000423058 KIAA1456Q9P272 454 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 NXT1Q9UKK6 140 aaKnown RBP6.48□□□□□ -1.37
SCN1A-204ENST00000423058 HSPB11Q9Y547 144 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 A0A0U1RQK1 487 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 CD8B2A6NJW9 211 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 UGDHO60701 494 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 AMY2AP04746 511 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 CD8BP10966 210 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF44P15621 663 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 MTNR1AP48039 350 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 NDUFAF5Q5TEU4 345 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 TECPR1Q7Z6L1 1165 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 CDRT4Q8N9R6 151 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 BTF3L4Q96K17 158 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 PRRT1Q99946 306 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 TPSD1Q9BZJ3 242 aa6.48□□□□□ -1.37
SCN1A-204ENST00000423058 MRPS2Q9Y399 296 aaKnown RBP6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms