RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 MAGEC1O60732 1142 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 CAVIN2O95810 425 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 TGM6O95932 706 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 CDH1P12830 882 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 ARSBP15848 533 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 GNA11P29992 359 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 SLC1A4P43007 532 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 MAGEA11P43364 429 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 TNFRSF4P43489 277 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 RGRP47804 291 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 UCNP55089 124 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 CLDN17P56750 224 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 B3GALT5-AS1P59052 145 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 SEC61BP60468 96 aaKnown RBP2.28□□□□□ -2.04
MCF2-204ENST00000414978 RPS4XP62701 263 aaKnown RBP2.28□□□□□ -2.04
MCF2-204ENST00000414978 NAAAQ02083 359 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 CNTN1Q12860 1018 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 ILKQ13418 452 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 CUL1Q13616 776 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 OPCMLQ14982 345 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 TMEM132DQ14C87 1099 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 TMEM41BQ5BJD5 291 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 C1orf220Q5T0J3 134 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 PDZK1Q5T2W1 519 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 ZNF730Q6ZMV8 503 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 Q75L30 129 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 LHFPL4Q7Z7J7 247 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 SATL1Q86VE3 508 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 SLC22A16Q86VW1 577 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 SLC37A3Q8NCC5 494 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 MNS1Q8NEH6 495 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 STARD8Q92502 1023 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 RAPGEF5Q92565 580 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 SLC35C1Q96A29 364 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 C20orf173Q96LM9 149 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 SPAG8Q99932 426 aaPredicted RBP2.28□□□□□ -2.04
MCF2-204ENST00000414978 WRAP53Q9BUR4 548 aaKnown RBP2.28□□□□□ -2.04
MCF2-204ENST00000414978 NAT10Q9H0A0 1025 aaKnown RBP2.28□□□□□ -2.04
MCF2-204ENST00000414978 SLC26A1Q9H2B4 701 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 HIPK2Q9H2X6 1198 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 CPVLQ9H3G5 476 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 WDR76Q9H967 626 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 SPACA1Q9HBV2 294 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 AURKAIP1Q9NWT8 199 aaPredicted RBP2.28□□□□□ -2.04
MCF2-204ENST00000414978 C2orf42Q9NWW7 574 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 SCML1Q9UN30 329 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 EPG5Q9HCE0 2579 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 GOLGA6L19H0YKK7 550 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 FCN1O00602 326 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 PDXKO00764 312 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 SIGLEC5O15389 551 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 CFLARO15519 480 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 BUD23O43709 281 aaKnown RBP2.28□□□□□ -2.04
MCF2-204ENST00000414978 RAMP2O60895 175 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 B4GALT2O60909 372 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 GLRA3O75311 464 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 EPOP01588 193 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 VTNP04004 478 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 YES1P07947 543 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 ANXA4P09525 319 aaPredicted RBP2.28□□□□□ -2.04
MCF2-204ENST00000414978 LCN1P31025 176 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 BMI1P35226 326 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 RORAP35398 523 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 GPR4P46093 362 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 CXCL12P48061 93 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 NPY2RP49146 381 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 VAMP7P51809 220 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 CCZ1BP86790 482 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 CCZ1P86791 482 aaPredicted RBP2.28□□□□□ -2.04
MCF2-204ENST00000414978 ITIH4Q14624 930 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 ZBTB6Q15916 424 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 ISXQ2M1V0 245 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 ALKBH6Q3KRA9 238 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 AGAP6Q5VW22 663 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 RESP18Q5W5W9 173 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 ZNF626Q68DY1 528 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 CAPN13Q6MZZ7 669 aaPredicted RBP2.28□□□□□ -2.04
MCF2-204ENST00000414978 EFL1Q7Z2Z2 1120 aaKnown RBP2.28□□□□□ -2.04
MCF2-204ENST00000414978 PRR26Q8N8Z3 221 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 ZNF441Q8N8Z8 693 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 UBA3Q8TBC4 463 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 DTX3LQ8TDB6 740 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 ZNF473Q8WTR7 871 aaKnown RBP2.28□□□□□ -2.04
MCF2-204ENST00000414978 ATL1Q8WXF7 558 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 LINC00476Q8WZB0 136 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 ISG20Q96AZ6 181 aaKnown RBP2.28□□□□□ -2.04
MCF2-204ENST00000414978 ZNF486Q96H40 463 aaPredicted RBP2.28□□□□□ -2.04
MCF2-204ENST00000414978 ZNF354BQ96LW1 612 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 KCNA7Q96RP8 456 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 FUCA2Q9BTY2 467 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 ALG12Q9BV10 488 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 OR2AG1Q9H205 316 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 LRRC40Q9H9A6 602 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 FZD3Q9NPG1 666 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 SDHAF3Q9NRP4 125 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 TECRQ9NZ01 308 aaKnown RBP2.28□□□□□ -2.04
MCF2-204ENST00000414978 ZNF346Q9UL40 294 aaKnown RBP2.28□□□□□ -2.04
MCF2-204ENST00000414978 VDAC3Q9Y277 283 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 COMMD3-BMI1R4GMX3 469 aa2.28□□□□□ -2.04
MCF2-204ENST00000414978 CNTNAP2Q9UHC6 1331 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms