RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 DAZAP2Q15038 168 aaPredicted RBP17.39■□□□□ 0.37
SMARCB1-204ENST00000407422 CPEB4Q17RY0 729 aaKnown RBP eCLIP17.39■□□□□ 0.37
SMARCB1-204ENST00000407422 TMEM44Q2T9K0 475 aa17.39■□□□□ 0.37
SMARCB1-204ENST00000407422 CPTPQ5TA50 214 aa17.39■□□□□ 0.37
SMARCB1-204ENST00000407422 ZCCHC12Q6PEW1 402 aa17.39■□□□□ 0.37
SMARCB1-204ENST00000407422 P4HA3Q7Z4N8 544 aa17.39■□□□□ 0.37
SMARCB1-204ENST00000407422 COX18Q8N8Q8 333 aa17.39■□□□□ 0.37
SMARCB1-204ENST00000407422 SMPDL3BQ92485 455 aa17.39■□□□□ 0.37
SMARCB1-204ENST00000407422 ZNF845Q96IR2 970 aaPredicted RBP17.39■□□□□ 0.37
SMARCB1-204ENST00000407422 NPAS1Q99742 590 aa17.39■□□□□ 0.37
SMARCB1-204ENST00000407422 PINK1Q9BXM7 581 aa17.39■□□□□ 0.37
SMARCB1-204ENST00000407422 VDAC3Q9Y277 283 aa17.39■□□□□ 0.37
SMARCB1-204ENST00000407422 SETD2Q9BYW2 2564 aaPredicted RBP17.38■□□□□ 0.37
SMARCB1-204ENST00000407422 RGS16O15492 202 aaPredicted RBP17.38■□□□□ 0.37
SMARCB1-204ENST00000407422 CTIFO43310 598 aaKnown RBP17.38■□□□□ 0.37
SMARCB1-204ENST00000407422 NDUFB5O43674 189 aa17.38■□□□□ 0.37
SMARCB1-204ENST00000407422 ZNF500O60304 480 aaPredicted RBP17.38■□□□□ 0.37
SMARCB1-204ENST00000407422 NGFRP08138 427 aa17.38■□□□□ 0.37
SMARCB1-204ENST00000407422 EPXP11678 715 aa17.38■□□□□ 0.37
SMARCB1-204ENST00000407422 RPL3P39023 403 aaKnown RBP17.38■□□□□ 0.37
SMARCB1-204ENST00000407422 ART1P52961 327 aa17.38■□□□□ 0.37
SMARCB1-204ENST00000407422 IST1P53990 364 aa17.38■□□□□ 0.37
SMARCB1-204ENST00000407422 CDC20BQ86Y33 519 aa17.38■□□□□ 0.37
SMARCB1-204ENST00000407422 RIMKLAQ8IXN7 391 aa17.38■□□□□ 0.37
SMARCB1-204ENST00000407422 GOT1L1Q8NHS2 421 aaPredicted RBP17.38■□□□□ 0.37
SMARCB1-204ENST00000407422 PPP1R14CQ8TAE6 165 aa17.38■□□□□ 0.37
SMARCB1-204ENST00000407422 CDS1Q92903 461 aa17.38■□□□□ 0.37
SMARCB1-204ENST00000407422 PPP1R36Q96LQ0 422 aa17.38■□□□□ 0.37
SMARCB1-204ENST00000407422 KLHDC3Q9BQ90 382 aa17.38■□□□□ 0.37
SMARCB1-204ENST00000407422 CXorf36Q9H7Y0 433 aa17.38■□□□□ 0.37
SMARCB1-204ENST00000407422 PACSIN3Q9UKS6 424 aa17.38■□□□□ 0.37
SMARCB1-204ENST00000407422 A8MXE2 369 aa17.37■□□□□ 0.37
SMARCB1-204ENST00000407422 LINC01387J3KSC0 135 aa17.37■□□□□ 0.37
SMARCB1-204ENST00000407422 HSPA4LO95757 839 aa17.37■□□□□ 0.37
SMARCB1-204ENST00000407422 C6orf47O95873 294 aa17.37■□□□□ 0.37
SMARCB1-204ENST00000407422 G6PDP11413 515 aa17.37■□□□□ 0.37
SMARCB1-204ENST00000407422 DDX5P17844 614 aaKnown RBP17.37■□□□□ 0.37
SMARCB1-204ENST00000407422 PRIM2P49643 509 aa17.37■□□□□ 0.37
SMARCB1-204ENST00000407422 CHI3L2Q15782 390 aa17.37■□□□□ 0.37
SMARCB1-204ENST00000407422 GLYR1Q49A26 553 aaPredicted RBP17.37■□□□□ 0.37
SMARCB1-204ENST00000407422 VWA1Q6PCB0 445 aa17.37■□□□□ 0.37
SMARCB1-204ENST00000407422 ZNF781Q8N8C0 355 aa17.37■□□□□ 0.37
SMARCB1-204ENST00000407422 CNEP1R1Q8N9A8 125 aa17.37■□□□□ 0.37
SMARCB1-204ENST00000407422 OR5P2Q8WZ92 322 aa17.37■□□□□ 0.37
SMARCB1-204ENST00000407422 COQ8BQ96D53 544 aa17.37■□□□□ 0.37
SMARCB1-204ENST00000407422 STARD4Q96DR4 205 aa17.37■□□□□ 0.37
SMARCB1-204ENST00000407422 CHMP6Q96FZ7 201 aa17.37■□□□□ 0.37
SMARCB1-204ENST00000407422 BTBD2Q9BX70 525 aa17.37■□□□□ 0.37
SMARCB1-204ENST00000407422 C20orf27Q9GZN8 174 aa17.37■□□□□ 0.37
SMARCB1-204ENST00000407422 PIGMQ9H3S5 423 aa17.37■□□□□ 0.37
SMARCB1-204ENST00000407422 TNFRSF21O75509 655 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 CCT3P49368 545 aaKnown RBP17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 EEFSECP57772 596 aaKnown RBP17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 CD226Q15762 336 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 PDCD2Q16342 344 aaPredicted RBP17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 GGNQ86UU5 652 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 PSMA8Q8TAA3 256 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 FNDC9Q8TBE3 224 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 SH3YL1Q96HL8 342 aaPredicted RBP17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 UBQLN4Q9NRR5 601 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 CCM2LQ9NUG4 571 aaPredicted RBP17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 ATAD3AQ9NVI7 634 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 AP4B1Q9Y6B7 739 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 KCNE3Q9Y6H6 103 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 SMNDC1O75940 238 aaKnown RBP eCLIP17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 SERPINE1P05121 402 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 PRPS1L1P21108 318 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 RNF144AP50876 292 aaPredicted RBP17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 POU6F2P78424 691 aaPredicted RBP17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 TP53BP2Q13625 1128 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 MPP2Q14168 576 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 PON3Q15166 354 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 OR2A2Q6IF42 318 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 BTLAQ7Z6A9 289 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 STACQ99469 402 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 CENPHQ9H3R5 247 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 PIGUQ9H490 435 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 DUSP22Q9NRW4 184 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 GPATCH2Q9NW75 528 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 ST6GALNAC2Q9UJ37 374 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 RAB21Q9UL25 225 aa17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 EIF3LQ9Y262 564 aaKnown RBP17.36■□□□□ 0.37
SMARCB1-204ENST00000407422 SCDO00767 359 aa17.35■□□□□ 0.37
SMARCB1-204ENST00000407422 CRHP06850 196 aa17.35■□□□□ 0.37
SMARCB1-204ENST00000407422 HPGDP15428 266 aa17.35■□□□□ 0.37
SMARCB1-204ENST00000407422 CPOXP36551 454 aa17.35■□□□□ 0.37
SMARCB1-204ENST00000407422 KIR2DL2P43627 348 aaPredicted RBP17.35■□□□□ 0.37
SMARCB1-204ENST00000407422 ABCE1P61221 599 aaKnown RBP17.35■□□□□ 0.37
SMARCB1-204ENST00000407422 SIRPAP78324 504 aa17.35■□□□□ 0.37
SMARCB1-204ENST00000407422 EMX2Q04743 252 aa17.35■□□□□ 0.37
SMARCB1-204ENST00000407422 SPDYE7PQ495Y7 208 aa17.35■□□□□ 0.37
SMARCB1-204ENST00000407422 CDC73Q6P1J9 531 aa17.35■□□□□ 0.37
SMARCB1-204ENST00000407422 METTL25Q8N6Q8 603 aa17.35■□□□□ 0.37
SMARCB1-204ENST00000407422 OR5AK3PQ8NH89 298 aa17.35■□□□□ 0.37
SMARCB1-204ENST00000407422 PRPF18Q99633 342 aaKnown RBP17.35■□□□□ 0.37
SMARCB1-204ENST00000407422 DUSP26Q9BV47 211 aa17.35■□□□□ 0.37
SMARCB1-204ENST00000407422 ACTRT3Q9BYD9 372 aa17.35■□□□□ 0.37
SMARCB1-204ENST00000407422 RNF122Q9H9V4 155 aa17.35■□□□□ 0.37
SMARCB1-204ENST00000407422 SSU72Q9NP77 194 aaKnown RBP17.35■□□□□ 0.37
SMARCB1-204ENST00000407422 GIN1Q9NXP7 522 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms