RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 INHBBP09529 407 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 ZGLP1P0C6A0 271 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 ATXN8OSP0DMR3 200 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 PUM1Q14671 1186 aaKnown RBP eCLIP16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 EXOC3L2Q2M3D2 409 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 DEF8Q6ZN54 512 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 SLC16A12Q6ZSM3 486 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 COX15Q7KZN9 410 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 ENTHD1Q8IYW4 607 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 ZNF615Q8N8J6 731 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 BMPERQ8N8U9 685 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 MORN4Q8NDC4 146 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 RHOXF1Q8NHV9 184 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 VANGL1Q8TAA9 524 aaPredicted RBP16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 DOK4Q8TEW6 326 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 PTPMT1Q8WUK0 201 aaPredicted RBP16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 PIK3R3Q92569 461 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 TSLPQ969D9 159 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 YIPF6Q96EC8 236 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 ZPBPQ9BS86 351 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 SLC26A1Q9H2B4 701 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 SEMA4GQ9NTN9 838 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 ACER3Q9NUN7 267 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 C19orf25Q9UFG5 118 aaPredicted RBP16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 A0A1B0GVG6 124 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 C9J4A7 227 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 HYAL3O43820 417 aaPredicted RBP16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 BRINP1O60477 761 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 FCMRO60667 390 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 BCAS1O75363 584 aaPredicted RBP16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 INMTO95050 263 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 H1F0P07305 194 aaKnown RBP16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 CD63P08962 238 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 KRT20P35900 424 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 PSG6Q00889 435 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 GPR68Q15743 365 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 CYP27C1Q4G0S4 372 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 UBE2UQ5VVX9 321 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 HLA-DQA1Q5Y7H0 255 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 C16orf52Q8NHV5 167 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 PPP1R14BQ96C90 147 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 PRRC1Q96M27 445 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 ARHGDIGQ99819 225 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 POLR2J2Q9GZM3 115 aaKnown RBP16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 POLR2J3Q9H1A7 115 aaKnown RBP16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 WDR54Q9H977 334 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 ACOT13Q9NPJ3 140 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 SLC39A1Q9NY26 324 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 ETAA1Q9NY74 926 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 CTSFQ9UBX1 484 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 RNF6Q9Y252 685 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 PCDHGA1Q9Y5H4 931 aa16.86■□□□□ 0.29
CCDC88C-203ENST00000389856 MEN1O00255 615 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 AP3D1O14617 1153 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 KCNK2O95069 426 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 TIAF1O95411 115 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 MT-ND2P03891 347 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 ZNF182P17025 639 aaPredicted RBP16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 RPS4Y1P22090 263 aaKnown RBP16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 CBLP22681 906 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 PPICP45877 212 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 ENTPD1P49961 510 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 RGS8P57771 180 aaPredicted RBP16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 SPEM2Q0P670 501 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 CTF1Q16619 201 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 FLYWCH1Q4VC44 716 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 RANBP3LQ86VV4 465 aaPredicted RBP16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 CCDC71Q8IV32 467 aaPredicted RBP16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 SLC2A12Q8TD20 617 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 TRUB1Q8WWH5 349 aaKnown RBP16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 FNDC11Q9BVV2 318 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 OR8D2Q9GZM6 311 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 FKBP14Q9NWM8 211 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 PSORS1C1Q9UIG5 152 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 ZNF318Q5VUA4 2279 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 SH3D21A4FU49 640 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 OR2W5A6NFC9 320 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 CLDN24A6NM45 220 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 FAAHO00519 579 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 NME6O75414 186 aaPredicted RBP16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 RECKO95980 971 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 ADAP00813 363 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 CCNYL3P0C7X3 344 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 NID1P14543 1247 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 LCN1P31025 176 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 SERPINB10P48595 397 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 SLC37A1P57057 533 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 PIGFQ07326 219 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 TBCEQ15813 527 aaPredicted RBP16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 DECR1Q16698 335 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 DCAF12Q5T6F0 453 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 ZNF385CQ66K41 422 aaPredicted RBP16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 TCTN3Q6NUS6 607 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 FIGNL1Q6PIW4 674 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 SLC29A4Q7RTT9 530 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 P2RY8Q86VZ1 359 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 VRK2Q86Y07 508 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 PRSS58Q8IYP2 241 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 FNDC8Q8TC99 324 aa16.85■□□□□ 0.29
CCDC88C-203ENST00000389856 APH1BQ8WW43 257 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms