RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CEBPEQ15744 281 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 DUSP7Q16829 419 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 SZRD1Q7Z422 152 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 ZNF605Q86T29 641 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 SLC44A2Q8IWA5 706 aaPredicted RBP9.44□□□□□ -0.9
VPS53-202ENST00000389040 LGI4Q8N135 537 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 SLC5A8Q8N695 610 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 SLC35G5Q96KT7 338 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 NODALQ96S42 347 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 MMP25Q9NPA2 562 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 NECTIN3Q9NQS3 549 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 ZCCHC3Q9NUD5 404 aaKnown RBP9.44□□□□□ -0.9
VPS53-202ENST00000389040 FBXL4Q9UKA2 621 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 FAM32AQ9Y421 112 aaKnown RBP9.44□□□□□ -0.9
VPS53-202ENST00000389040 PCDHGA9Q9Y5G4 932 aaKnown RBP9.44□□□□□ -0.9
VPS53-202ENST00000389040 CLCA3PQ9Y6N3 262 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 ENPP4Q9Y6X5 453 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 CFAP47Q6ZTR5 3102 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 SAGE2PA6NJ88 616 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 A8MVJ9 347 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 H3BMQ9 156 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 ERVH48-1M5A8F1 160 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 XPNPEP2O43895 674 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 ERAL1O75616 437 aaKnown RBP9.44□□□□□ -0.9
VPS53-202ENST00000389040 CEACAM4O75871 244 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 MFN2O95140 757 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 SERPINA7P05543 415 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 ANXA8P13928 327 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 PORP16435 677 aaPredicted RBP9.44□□□□□ -0.9
VPS53-202ENST00000389040 RHCEP18577 417 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 CD247P20963 164 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 FMO3P31513 532 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 LIMS1P48059 325 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 NUP107P57740 925 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 ATP1A4Q13733 1029 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 PCOLCEQ15113 449 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 MAPK11Q15759 364 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 TMEM64Q6YI46 380 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 CCDC71Q8IV32 467 aaPredicted RBP9.44□□□□□ -0.9
VPS53-202ENST00000389040 TMEM52Q8NDY8 209 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 OR8K3Q8NH51 312 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 SFXN5Q8TD22 340 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 HRASLS5Q96KN8 279 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 COG8Q96MW5 612 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 DGAT2Q96PD7 388 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 RBCK1Q9BYM8 510 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 LHPPQ9H008 270 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 OR51I1Q9H343 314 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 TIMMDC1Q9NPL8 285 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 ACER3Q9NUN7 267 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 P2RX2Q9UBL9 471 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 ENTPD4Q9Y227 616 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 POFUT2Q9Y2G5 429 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 TPRKBQ9Y3C4 175 aa9.44□□□□□ -0.9
VPS53-202ENST00000389040 IGF2RP11717 2491 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 SLC28A2O43868 658 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 FGF17O60258 216 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 NOL3O60936 208 aaKnown RBP9.43□□□□□ -0.9
VPS53-202ENST00000389040 GADD45GO95257 159 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 IFNA16P05015 189 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 ALPPP05187 535 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 OR12D1P0DN82 309 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 MAGEA8P43361 318 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 KHKP50053 298 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 XKP51811 444 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 HMGA2P52926 109 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 TMBIM6P55061 237 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 TBR1Q16650 682 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 DEFB109BQ30KR1 87 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 FAM69BQ5VUD6 431 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 GTF2IRD2BQ6EKJ0 949 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 BHLHB9Q6PI77 547 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 PAPD4Q6PIY7 484 aaKnown RBP9.43□□□□□ -0.9
VPS53-202ENST00000389040 GTF2IRD2Q86UP8 949 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 B3GNT7Q8NFL0 401 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 OR5D16Q8NGK9 328 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 SUN3Q8TAQ9 357 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 PHF10Q8WUB8 498 aaKnown RBP9.43□□□□□ -0.9
VPS53-202ENST00000389040 RASSF5Q8WWW0 418 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 PROX1Q92786 737 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 TSLPQ969D9 159 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 MUL1Q969V5 352 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 CNRIP1Q96F85 164 aaPredicted RBP9.43□□□□□ -0.9
VPS53-202ENST00000389040 ZNF607Q96SK3 696 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 TREX2Q9BQ50 279 aaPredicted RBP9.43□□□□□ -0.9
VPS53-202ENST00000389040 WDR77Q9BQA1 342 aaPredicted RBP9.43□□□□□ -0.9
VPS53-202ENST00000389040 PSD2Q9BQI7 771 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 RLIMQ9NVW2 624 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 SCN3BQ9NY72 215 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 AASSQ9UDR5 926 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 TEKT2Q9UIF3 430 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 ANKRD11Q6UB99 2663 aaPredicted RBP9.43□□□□□ -0.9
VPS53-202ENST00000389040 ARRDC5A6NEK1 342 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 MKRN2OSH3BPM6 223 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 OR10H2O60403 315 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 LDB3O75112 727 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 SERPINB7O75635 380 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 CCNB2O95067 398 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 ATE1O95260 518 aa9.43□□□□□ -0.9
VPS53-202ENST00000389040 CPMP14384 443 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms