RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 CACNG3O60359 315 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 ANXA7P20073 488 aaKnown RBP8.29□□□□□ -1.08
LIG3-202ENST00000378526 DAOAP59103 153 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 TROAPQ12815 778 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 NKPD1Q17RQ9 610 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 NANOGP8Q6NSW7 305 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 SLC27A1Q6PCB7 646 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 OR13F1Q8NGS4 319 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 INTS12Q96CB8 462 aaKnown RBP8.29□□□□□ -1.08
LIG3-202ENST00000378526 CTDSP1Q9GZU7 261 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 NANOGQ9H9S0 305 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 DOCK8Q8NF50 2099 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 NCBP2LA6PVI3 153 aaKnown RBP8.29□□□□□ -1.08
LIG3-202ENST00000378526 C9JVG2 144 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 XRCC3O43542 346 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 SERPINA5P05154 406 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 MRPL3P09001 348 aaKnown RBP8.29□□□□□ -1.08
LIG3-202ENST00000378526 ITGAMP11215 1152 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 NDUFV2P19404 249 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 IL1R2P27930 398 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 CNTN2Q02246 1040 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 HTR4Q13639 388 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 COL5A1-AS1Q5SY13 56 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 THEM4Q5T1C6 240 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 FA2HQ7L5A8 372 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 OR5K2Q8NHB8 316 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 FOXJ1Q92949 421 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 CRTAC1Q9NQ79 661 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 ESPL1Q14674 2120 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 NRCAMQ92823 1304 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 MT-ND4P03905 459 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 CLDN6P56747 220 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 SLC7A9P82251 487 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 OR4A47Q6IF82 309 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 TOMM20LQ6UXN7 152 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 NLRC3Q7RTR2 1065 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 RNF180Q86T96 592 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 OR2M7Q8NG81 312 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 OR4A4PQ8NGN8 299 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 TVP23CQ96ET8 276 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 JSRP1Q96MG2 331 aaPredicted RBP8.29□□□□□ -1.08
LIG3-202ENST00000378526 TTPALQ9BTX7 342 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 ALG8Q9BVK2 526 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 LOC105369274A0A096LPK9 316 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 RFPL4AA6NLU0 287 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 RFPL4AL1F8VTS6 287 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 DCTN6O00399 190 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 PPP2CBP62714 309 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 CRMP1Q14194 572 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 LCN10Q6JVE6 187 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 GPR155Q7Z3F1 870 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 OR4N4Q8N0Y3 316 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 OR5D14Q8NGL3 314 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 OR2T4Q8NH00 348 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 OR5B3Q8NH48 314 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 PGAM5Q96HS1 289 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 HAPLN3Q96S86 360 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 ZNF552Q9H707 407 aaPredicted RBP8.29□□□□□ -1.08
LIG3-202ENST00000378526 GPRC5CQ9NQ84 441 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 NUP205Q92621 2012 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 LAMC3Q9Y6N6 1575 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 ZNF780AO75290 641 aaPredicted RBP8.29□□□□□ -1.08
LIG3-202ENST00000378526 GIPP09681 153 aaPredicted RBP8.29□□□□□ -1.08
LIG3-202ENST00000378526 FXYD4P59646 89 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 GBX1Q14549 363 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 GLYR1Q49A26 553 aaPredicted RBP8.29□□□□□ -1.08
LIG3-202ENST00000378526 FAM171A1Q5VUB5 890 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 FAM129CQ86XR2 697 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 MRPL38Q96DV4 380 aaKnown RBP8.29□□□□□ -1.08
LIG3-202ENST00000378526 SGCZQ96LD1 299 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 NIFKQ9BYG3 293 aaKnown RBP8.29□□□□□ -1.08
LIG3-202ENST00000378526 SMIM3Q9BZL3 60 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 OR2J1Q9GZK6 312 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 TMEM134Q9H6X4 195 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 AGO4Q9HCK5 861 aaKnown RBP8.29□□□□□ -1.08
LIG3-202ENST00000378526 UTS2RQ9UKP6 389 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 ZNF623O75123 536 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 PSMB1P20618 241 aaKnown RBP8.29□□□□□ -1.08
LIG3-202ENST00000378526 GABRA5P31644 462 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 CSKP41240 450 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 PIN1Q13526 163 aaPredicted RBP8.29□□□□□ -1.08
LIG3-202ENST00000378526 GPR50Q13585 617 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 PLGLAQ15195 96 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 LEG1Q6P5S2 330 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 TMEM220Q6QAJ8 160 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 MEX3BQ6ZN04 569 aaKnown RBP8.29□□□□□ -1.08
LIG3-202ENST00000378526 Q6ZN92 141 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 TIFABQ6ZNK6 161 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 GRINAQ7Z429 371 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 IRF2BP2Q7Z5L9 587 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 ZNF440Q8IYI8 595 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 ZNF738Q8NE65 137 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 FIBINQ8TAL6 211 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 ALG3Q92685 438 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 HINT2Q9BX68 163 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 ACTL8Q9H568 366 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 GPR83Q9NYM4 423 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 KIAA1522Q9P206 1035 aaPredicted RBP8.29□□□□□ -1.08
LIG3-202ENST00000378526 FAM237AA0A1B0GTK4 181 aa8.29□□□□□ -1.08
LIG3-202ENST00000378526 IDSP22304 550 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms