RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 MGLLQ99685 303 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 CPEB1Q9BZB8 566 aaKnown RBP4.41□□□□□ -1.7
SCN1A-202ENST00000375405 IL22Q9GZX6 179 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 SDCBP2Q9H190 292 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 FOLH1BQ9HBA9 442 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 WSB2Q9NYS7 404 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-202ENST00000375405 RHCGQ9UBD6 479 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 PTRH2Q9Y3E5 179 aaKnown RBP4.41□□□□□ -1.7
SCN1A-202ENST00000375405 ARAP3Q8WWN8 1544 aa4.41□□□□□ -1.7
SCN1A-202ENST00000375405 MUC4Q99102 2169 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 MPDZO75970 2070 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 GLOD5A6NK44 160 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 F8W036 122 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 BET1O15155 118 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 SLC37A4O43826 429 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 CYTIPO60759 359 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 RGS11O94810 467 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 SCELO95171 688 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 MT-ND1P03886 318 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 OPN1LWP04000 364 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 GRPP07492 148 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 OR5G3P0C626 314 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 MYCLP1P12525 358 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-202ENST00000375405 INSRRP14616 1297 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 AADACP22760 399 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 CD82P27701 267 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 PPP1CCP36873 323 aaKnown RBP4.4□□□□□ -1.7
SCN1A-202ENST00000375405 KIR2DL1P43626 348 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-202ENST00000375405 KIR2DL2P43627 348 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-202ENST00000375405 ID4P47928 161 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 ACTA2P62736 377 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 ACTG2P63267 376 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 ACTC1P68032 377 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 ACTA1P68133 377 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 FOLH1Q04609 750 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 SQSTM1Q13501 440 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 ZNF542PQ5EBM4 170 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 SBSNQ6UWP8 590 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 USP43Q70EL4 1123 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 ASRGL1Q7L266 308 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 C15orf54Q8N8G6 183 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 TSEN2Q8NCE0 465 aaKnown RBP4.4□□□□□ -1.7
SCN1A-202ENST00000375405 MYLIPQ8WY64 445 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 DCUN1D4Q92564 292 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 RGMAQ96B86 450 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 SPACA9Q96E40 222 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-202ENST00000375405 FAHD2AQ96GK7 314 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 HHIPL1Q96JK4 782 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 KCTD7Q96MP8 289 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 KCNC2Q96PR1 638 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 C12orf49Q9H741 205 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 ERVMER34-1Q9H9K5 563 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 PRTFDC1Q9NRG1 225 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 SACM1LQ9NTJ5 587 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 SPTA1P02549 2419 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 C17orf112F2Z3M2 114 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 I6L893 689 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-202ENST00000375405 K7ERU9 68 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 DLGAP1O14490 977 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 OPN1SWP03999 348 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 SERPINA5P05154 406 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 RAP2AP10114 183 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 FRKP42685 505 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-202ENST00000375405 GSK3BP49841 420 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 PRKAA2P54646 552 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 RAP2BP61225 183 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 CACNA1EQ15878 2313 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 MBLAC2Q68D91 279 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 PRR27Q6MZM9 219 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 PTF1AQ7RTS3 328 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 ABI3BPQ7Z7G0 1075 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 WFDC3Q8IUB2 231 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 DEFB106AQ8N104 65 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 NETO2Q8NC67 525 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 OR56B4Q8NH76 319 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 NFKBIDQ8NI38 313 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 WDR20Q8TBZ3 569 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 FANK1Q8TC84 345 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 TBC1D20Q96BZ9 403 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 LGALS12Q96DT0 336 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 BARHL1Q9BZE3 327 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 MARCH5Q9NX47 278 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 ZNF70Q9UC06 446 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-202ENST00000375405 RARRES3Q9UL19 164 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 ATP10AO60312 1499 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 ZMYM2Q9UBW7 1377 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 GPR75-ASB3A0A0A6YYF3 556 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 A0A1W2PRB8 838 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 TRAPPC2LH3BP13 241 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 M0R3E3 92 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 ABCD4O14678 606 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 MSTNO14793 375 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 FGF10O15520 208 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-202ENST00000375405 KLF8O95600 359 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-202ENST00000375405 EPOP01588 193 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 CD52P31358 61 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 TRHRP34981 398 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-202ENST00000375405 CRISP3P54108 245 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 CASP7P55210 303 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 TAS2R46P59540 309 aa4.4□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms