RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 ZNF141Q15928 474 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 FAAH2Q6GMR7 532 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 C1orf94Q6P1W5 598 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 C9orf40Q8IXQ3 194 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 OR4C3Q8NH37 302 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 NR4A3Q92570 626 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 ZNF566Q969W8 418 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 PMEPA1Q969W9 287 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 ADIPOR1Q96A54 375 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 SLC41A3Q96GZ6 507 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 SLC46A1Q96NT5 459 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 MYCBPQ99417 103 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-202ENST00000372405 RHNO1Q9BSD3 238 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 NXF5Q9H1B4 397 aaKnown RBP12.73□□□□□ -0.37
PTPRF-202ENST00000372405 AKIRIN1Q9H9L7 192 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-202ENST00000372405 C11orf16Q9NQ32 467 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 OR10H1Q9Y4A9 318 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 ZAR1LA6NP61 321 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 M0R129 80 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 CDX4O14627 284 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-202ENST00000372405 LYPD3O95274 346 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 SOX14O95416 240 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 ANGPTL1O95841 491 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 GP1BAP07359 652 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 CCL4P13236 92 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 OSMP13725 252 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 GABRB1P18505 474 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 PPICP45877 212 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 UGT2B15P54855 530 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 NUP107P57740 925 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 ESRRGP62508 458 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 DCDP81605 110 aaKnown RBP12.72□□□□□ -0.37
PTPRF-202ENST00000372405 PIGFQ07326 219 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 WDR88Q6ZMY6 472 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 APLFQ8IW19 511 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-202ENST00000372405 CCDC103Q8IW40 242 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 ZNF614Q8N883 585 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 BPIFB6Q8NFQ5 453 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 FAM81AQ8TBF8 368 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 RHBDD1Q8TEB9 315 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 FKBP10Q96AY3 582 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 PRSS27Q9BQR3 290 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 FAM192AQ9GZU8 254 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 RBM38Q9H0Z9 239 aaKnown RBP12.72□□□□□ -0.37
PTPRF-202ENST00000372405 ANKRD19PQ9H560 264 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 RXFP3Q9NSD7 469 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 DNAJB12Q9NXW2 375 aaKnown RBP12.72□□□□□ -0.37
PTPRF-202ENST00000372405 ZNF226Q9NYT6 803 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 FLRT3Q9NZU0 649 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 IGHV3-20A0A0C4DH32 117 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 TTC36A6NLP5 189 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 IDSB3KWA1 339 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 CCDC159P0C7I6 412 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 ZNF28P17035 718 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 CSTF2P33240 577 aaKnown RBP eCLIP12.72□□□□□ -0.37
PTPRF-202ENST00000372405 KRT20P35900 424 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 IDH2P48735 452 aaKnown RBP12.72□□□□□ -0.37
PTPRF-202ENST00000372405 GPR143P51810 404 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 ATP12AP54707 1039 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 ILKQ13418 452 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 TRA2AQ13595 282 aaKnown RBP eCLIP12.72□□□□□ -0.37
PTPRF-202ENST00000372405 EBPQ15125 230 aaKnown RBP12.72□□□□□ -0.37
PTPRF-202ENST00000372405 SF3A2Q15428 464 aaKnown RBP12.72□□□□□ -0.37
PTPRF-202ENST00000372405 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.72□□□□□ -0.37
PTPRF-202ENST00000372405 ZNF773Q6PK81 442 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 CD300LDQ6UXZ3 194 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 OVCH1Q7RTY7 1134 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 PRICKLE2Q7Z3G6 844 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 RANBP3LQ86VV4 465 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-202ENST00000372405 GRAMD2AQ8IUY3 354 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 OR14A16Q8NHC5 309 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 TMEM255BQ8WV15 326 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 SLC38A4Q969I6 547 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 EFHD2Q96C19 240 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-202ENST00000372405 PHOX2BQ99453 314 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 G6PC3Q9BUM1 346 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 NRSN2Q9GZP1 204 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 POLR2J3Q9H1A7 115 aaKnown RBP12.72□□□□□ -0.37
PTPRF-202ENST00000372405 SLC7A7Q9UM01 511 aa12.72□□□□□ -0.37
PTPRF-202ENST00000372405 VSTM2BA6NLU5 285 aa12.71□□□□□ -0.37
PTPRF-202ENST00000372405 FLRT2O43155 660 aa12.71□□□□□ -0.37
PTPRF-202ENST00000372405 GALR2O43603 387 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-202ENST00000372405 CD59P13987 128 aa12.71□□□□□ -0.37
PTPRF-202ENST00000372405 PTNP21246 168 aa12.71□□□□□ -0.37
PTPRF-202ENST00000372405 EEF1B2P24534 225 aaKnown RBP12.71□□□□□ -0.37
PTPRF-202ENST00000372405 POU1F1P28069 291 aa12.71□□□□□ -0.37
PTPRF-202ENST00000372405 ACAA2P42765 397 aaKnown RBP12.71□□□□□ -0.37
PTPRF-202ENST00000372405 OMPP47874 163 aa12.71□□□□□ -0.37
PTPRF-202ENST00000372405 GABARAPL2P60520 117 aa12.71□□□□□ -0.37
PTPRF-202ENST00000372405 OCA2Q04671 838 aa12.71□□□□□ -0.37
PTPRF-202ENST00000372405 FGFBP1Q14512 234 aa12.71□□□□□ -0.37
PTPRF-202ENST00000372405 IL11RAQ14626 422 aa12.71□□□□□ -0.37
PTPRF-202ENST00000372405 OR1Q1Q15612 314 aa12.71□□□□□ -0.37
PTPRF-202ENST00000372405 DECR1Q16698 335 aa12.71□□□□□ -0.37
PTPRF-202ENST00000372405 LINC00471Q8N535 108 aa12.71□□□□□ -0.37
PTPRF-202ENST00000372405 AGBL5Q8NDL9 886 aa12.71□□□□□ -0.37
PTPRF-202ENST00000372405 OR1N1Q8NGS0 311 aa12.71□□□□□ -0.37
PTPRF-202ENST00000372405 RHOXF1Q8NHV9 184 aa12.71□□□□□ -0.37
PTPRF-202ENST00000372405 DAZLQ92904 295 aaKnown RBP12.71□□□□□ -0.37
PTPRF-202ENST00000372405 FRG2CA6NGY1 282 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms