RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 DGKQP52824 942 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 TPD52P55327 224 aaPredicted RBP16.61■□□□□ 0.25
CLN3-202ENST00000355477 MAGOHP61326 146 aaKnown RBP16.61■□□□□ 0.25
CLN3-202ENST00000355477 PHC1P78364 1004 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 POU6F2P78424 691 aaPredicted RBP16.61■□□□□ 0.25
CLN3-202ENST00000355477 GANABQ14697 944 aaKnown RBP16.61■□□□□ 0.25
CLN3-202ENST00000355477 SPDYE7PQ495Y7 208 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 RAET1LQ5VY80 246 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 OR4F3Q6IEY1 312 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 ARSKQ6UWY0 536 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 UBQLNLQ8IYU4 475 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 CLECL1Q8IZS7 167 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 OR56A1Q8NGH5 318 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 OR5AK3PQ8NH89 298 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 MGARPQ8TDB4 240 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 WNT2BQ93097 391 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 TLCD1Q96CP7 247 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 CHMP6Q96FZ7 201 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 STACQ99469 402 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 ACTRT3Q9BYD9 372 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 MEAF6Q9HAF1 191 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 TMBIM4Q9HC24 238 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 UBQLN4Q9NRR5 601 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 DUSP22Q9NRW4 184 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 GIN1Q9NXP7 522 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 CLCF1Q9UBD9 225 aa16.61■□□□□ 0.25
CLN3-202ENST00000355477 ANKRD28O15084 1053 aa16.6■□□□□ 0.25
CLN3-202ENST00000355477 NDUFB5O43674 189 aa16.6■□□□□ 0.25
CLN3-202ENST00000355477 ERLIN1O75477 346 aa16.6■□□□□ 0.25
CLN3-202ENST00000355477 RCBTB2O95199 551 aa16.6■□□□□ 0.25
CLN3-202ENST00000355477 TGM6O95932 706 aa16.6■□□□□ 0.25
CLN3-202ENST00000355477 TMIGD3P0DMS9 266 aaPredicted RBP16.6■□□□□ 0.25
CLN3-202ENST00000355477 PEPDP12955 493 aa16.6■□□□□ 0.25
CLN3-202ENST00000355477 UQCRC1P31930 480 aa16.6■□□□□ 0.25
CLN3-202ENST00000355477 ASCL1P50553 236 aa16.6■□□□□ 0.25
CLN3-202ENST00000355477 SUCLG1P53597 346 aaKnown RBP16.6■□□□□ 0.25
CLN3-202ENST00000355477 TMEM44Q2T9K0 475 aa16.6■□□□□ 0.25
CLN3-202ENST00000355477 FBXL19-AS1Q494R0 122 aa16.6■□□□□ 0.25
CLN3-202ENST00000355477 CLEC4FQ8N1N0 589 aa16.6■□□□□ 0.25
CLN3-202ENST00000355477 SFXN5Q8TD22 340 aa16.6■□□□□ 0.25
CLN3-202ENST00000355477 TM9SF2Q99805 663 aa16.6■□□□□ 0.25
CLN3-202ENST00000355477 KLHDC3Q9BQ90 382 aa16.6■□□□□ 0.25
CLN3-202ENST00000355477 KCNN3Q9UGI6 736 aa16.6■□□□□ 0.25
CLN3-202ENST00000355477 ABCA4P78363 2273 aa16.59■□□□□ 0.25
CLN3-202ENST00000355477 HCRTR2O43614 444 aa16.59■□□□□ 0.25
CLN3-202ENST00000355477 SCN2BO60939 215 aa16.59■□□□□ 0.25
CLN3-202ENST00000355477 SNNO75324 88 aaPredicted RBP16.59■□□□□ 0.25
CLN3-202ENST00000355477 IL18BPO95998 194 aa16.59■□□□□ 0.25
CLN3-202ENST00000355477 LBPP18428 481 aa16.59■□□□□ 0.25
CLN3-202ENST00000355477 POU3F2P20265 443 aaPredicted RBP16.59■□□□□ 0.25
CLN3-202ENST00000355477 LCN1P31025 176 aa16.59■□□□□ 0.25
CLN3-202ENST00000355477 OPRM1P35372 400 aa16.59■□□□□ 0.25
CLN3-202ENST00000355477 CLDN20P56880 219 aa16.59■□□□□ 0.25
CLN3-202ENST00000355477 CD226Q15762 336 aa16.59■□□□□ 0.25
CLN3-202ENST00000355477 GLYR1Q49A26 553 aaPredicted RBP16.59■□□□□ 0.25
CLN3-202ENST00000355477 OR8J2Q8NGG1 315 aa16.59■□□□□ 0.25
CLN3-202ENST00000355477 ADAMTS15Q8TE58 950 aa16.59■□□□□ 0.25
CLN3-202ENST00000355477 RNASE6Q93091 150 aaKnown RBP16.59■□□□□ 0.25
CLN3-202ENST00000355477 INTS12Q96CB8 462 aaKnown RBP16.59■□□□□ 0.25
CLN3-202ENST00000355477 NPAS1Q99742 590 aa16.59■□□□□ 0.25
CLN3-202ENST00000355477 ZNF559Q9BR84 538 aa16.59■□□□□ 0.25
CLN3-202ENST00000355477 DPY30Q9C005 99 aa16.59■□□□□ 0.25
CLN3-202ENST00000355477 NEUROD4Q9HD90 331 aa16.59■□□□□ 0.25
CLN3-202ENST00000355477 JKAMPQ9P055 326 aa16.59■□□□□ 0.25
CLN3-202ENST00000355477 FAF1Q9UNN5 650 aaPredicted RBP16.59■□□□□ 0.25
CLN3-202ENST00000355477 VDAC3Q9Y277 283 aa16.59■□□□□ 0.25
CLN3-202ENST00000355477 NPIPA5A0A0B4J1W7 369 aa16.58■□□□□ 0.24
CLN3-202ENST00000355477 NPIPA7E9PJI5 369 aa16.58■□□□□ 0.24
CLN3-202ENST00000355477 H3BML4 177 aa16.58■□□□□ 0.24
CLN3-202ENST00000355477 SDHDO14521 159 aa16.58■□□□□ 0.24
CLN3-202ENST00000355477 NPIPA8P0DM63 369 aa16.58■□□□□ 0.24
CLN3-202ENST00000355477 SOAT1P35610 550 aa16.58■□□□□ 0.24
CLN3-202ENST00000355477 RNF144AP50876 292 aaPredicted RBP16.58■□□□□ 0.24
CLN3-202ENST00000355477 SLC18A1P54219 525 aa16.58■□□□□ 0.24
CLN3-202ENST00000355477 RPS26P62854 115 aaKnown RBP16.58■□□□□ 0.24
CLN3-202ENST00000355477 MYBPHQ13203 477 aa16.58■□□□□ 0.24
CLN3-202ENST00000355477 ANKRD46Q86W74 232 aa16.58■□□□□ 0.24
CLN3-202ENST00000355477 GRAMD2AQ8IUY3 354 aa16.58■□□□□ 0.24
CLN3-202ENST00000355477 KIRREL3Q8IZU9 778 aa16.58■□□□□ 0.24
CLN3-202ENST00000355477 GCNT2Q8N0V5 402 aa16.58■□□□□ 0.24
CLN3-202ENST00000355477 OR5D16Q8NGK9 328 aa16.58■□□□□ 0.24
CLN3-202ENST00000355477 GOT1L1Q8NHS2 421 aaPredicted RBP16.58■□□□□ 0.24
CLN3-202ENST00000355477 MOAP1Q96BY2 351 aa16.58■□□□□ 0.24
CLN3-202ENST00000355477 SH3YL1Q96HL8 342 aaPredicted RBP16.58■□□□□ 0.24
CLN3-202ENST00000355477 OR7D2Q96RA2 312 aa16.58■□□□□ 0.24
CLN3-202ENST00000355477 PIGQQ9BRB3 760 aa16.58■□□□□ 0.24
CLN3-202ENST00000355477 SERHL2Q9H4I8 314 aa16.58■□□□□ 0.24
CLN3-202ENST00000355477 THAP1Q9NVV9 213 aa16.58■□□□□ 0.24
CLN3-202ENST00000355477 A0A1W2PQD3 144 aa16.57■□□□□ 0.24
CLN3-202ENST00000355477 ENO4A6NNW6 628 aa16.57■□□□□ 0.24
CLN3-202ENST00000355477 EEF1E1-BLOC1S5C9J1V9 151 aa16.57■□□□□ 0.24
CLN3-202ENST00000355477 LINC01387J3KSC0 135 aa16.57■□□□□ 0.24
CLN3-202ENST00000355477 RNASET2O00584 256 aaKnown RBP16.57■□□□□ 0.24
CLN3-202ENST00000355477 SCDO00767 359 aa16.57■□□□□ 0.24
CLN3-202ENST00000355477 SEC14L5O43304 696 aa16.57■□□□□ 0.24
CLN3-202ENST00000355477 EEF1E1O43324 174 aaKnown RBP16.57■□□□□ 0.24
CLN3-202ENST00000355477 ALDOCP09972 364 aaKnown RBP16.57■□□□□ 0.24
CLN3-202ENST00000355477 HPGDP15428 266 aa16.57■□□□□ 0.24
CLN3-202ENST00000355477 KIR2DL3P43628 341 aa16.57■□□□□ 0.24
CLN3-202ENST00000355477 NME5P56597 212 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms