RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 MKXQ8IYA7 352 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 FAM222BQ8WU58 562 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 THEM6Q8WUY1 208 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 DPH3Q96FX2 82 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 TXNDC15Q96J42 360 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 NEDD4LQ96PU5 975 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 GNB4Q9HAV0 340 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 KLHL13Q9P2N7 655 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 OR14J1Q9UGF5 321 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 OR6C76A6NM76 312 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 PIP5K1CO60331 668 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 PRKD3O94806 890 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 SPARCP09486 303 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 ST6GAL1P15907 406 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 PROZP22891 400 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 PRLHRP49683 370 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 ERVK-16P61578 105 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 PON3Q15166 354 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 HEPHL1Q6MZM0 1159 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 NR4A3Q92570 626 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 DIRC2Q96SL1 478 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 SUCNR1Q9BXA5 334 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 SDCBP2Q9H190 292 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 PAK1IP1Q9NWT1 392 aaPredicted RBP7.83□□□□□ -1.16
HMGB1-203ENST00000341423 AMDHD2Q9Y303 409 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 ZNF175Q9Y473 711 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 RP1P56715 2156 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 GAPDHSO14556 408 aaPredicted RBP7.83□□□□□ -1.16
HMGB1-203ENST00000341423 CXCL13O43927 109 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 CDC14BO60729 498 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 GOSR1O95249 250 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 CLEC3BP05452 202 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 PNMTP11086 282 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 ELK4P28324 431 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 STAT5AP42229 794 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 OR3A3P47888 321 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 OR3A2P47893 321 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 RPL14P50914 215 aaKnown RBP7.83□□□□□ -1.16
HMGB1-203ENST00000341423 JAM2P57087 298 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 TSPAN5P62079 268 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 ST3GAL3Q11203 375 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 PAFAH1B3Q15102 231 aaKnown RBP7.83□□□□□ -1.16
HMGB1-203ENST00000341423 ATAD3CQ5T2N8 411 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 UBAP2Q5T6F2 1119 aaKnown RBP7.83□□□□□ -1.16
HMGB1-203ENST00000341423 THOC7Q6I9Y2 204 aaKnown RBP7.83□□□□□ -1.16
HMGB1-203ENST00000341423 CXorf57Q6NSI4 855 aaKnown RBP7.83□□□□□ -1.16
HMGB1-203ENST00000341423 MFSD9Q8NBP5 474 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 OR10A5Q9H207 317 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 OR10A2Q9H208 303 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 CSNK1G1Q9HCP0 422 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 TMED5Q9Y3A6 229 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 NAV3Q8IVL0 2385 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 NME6O75414 186 aaPredicted RBP7.82□□□□□ -1.16
HMGB1-203ENST00000341423 CD53P19397 219 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 GSSP48637 474 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 SLC6A19Q695T7 634 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 LAS2Q8IYD9 372 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 CCL17Q92583 94 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 HAS2Q92819 552 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 KLHL15Q96M94 604 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 MGME1Q9BQP7 344 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 MYOZ1Q9NP98 299 aaPredicted RBP7.82□□□□□ -1.16
HMGB1-203ENST00000341423 PITPNC1Q9UKF7 332 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 PLEKHA6Q9Y2H5 1048 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 ESPL1Q14674 2120 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 TERTO14746 1132 aaKnown RBP7.82□□□□□ -1.16
HMGB1-203ENST00000341423 OR2J2O76002 312 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 ATG12O94817 140 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 ACTL6AO96019 429 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 OPN1SWP03999 348 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 HSD3B1P14060 373 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 HSD3B2P26439 372 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 IDH2P48735 452 aaKnown RBP7.82□□□□□ -1.16
HMGB1-203ENST00000341423 GNGT1P63211 74 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 DAG1Q14118 895 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 CEP78Q5JTW2 689 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.82□□□□□ -1.16
HMGB1-203ENST00000341423 FAM166AQ6J272 317 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 PWWP2BQ6NUJ5 590 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 CATSPER1Q8NEC5 780 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 ACMSDQ8TDX5 336 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 SLC38A5Q8WUX1 472 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 CPNE4Q96A23 557 aaPredicted RBP7.82□□□□□ -1.16
HMGB1-203ENST00000341423 S100PBPQ96BU1 408 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 IMP4Q96G21 291 aaKnown RBP7.82□□□□□ -1.16
HMGB1-203ENST00000341423 GINS4Q9BRT9 223 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 CLPTM1O96005 669 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 DHFRP00374 187 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 HMGN1P05114 100 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 RAB40ALP0C0E4 278 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 GXYLT1Q4G148 440 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 PIP5KL1Q5T9C9 394 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 METTL11BQ5VVY1 283 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 DCAF12L2Q5VW00 463 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 CDRT15Q96T59 188 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 TTYH2Q9BSA4 534 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 CCDC167Q9P0B6 97 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 STOX2Q9P2F5 926 aaPredicted RBP7.82□□□□□ -1.16
HMGB1-203ENST00000341423 SNX12Q9UMY4 172 aa7.82□□□□□ -1.16
HMGB1-203ENST00000341423 EFCAB9A8MZ26 197 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms