RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 CLSTN3Q9BQT9 956 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 TGIF2Q9GZN2 237 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 CNOT2Q9NZN8 540 aaKnown RBP15.15■□□□□ 0.02
NPHP3-201ENST00000337331 C5AR2Q9P296 337 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 USP3Q9Y6I4 520 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 ENPP4Q9Y6X5 453 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 ABCA3Q99758 1704 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 TCRBV16S1A1N1A0A5B0 115 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 GRXCR1A8MXD5 290 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 E2F3O00716 465 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 SDC1P18827 310 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 S100GP29377 79 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 ZNF791Q3KP31 576 aaPredicted RBP15.15■□□□□ 0.02
NPHP3-201ENST00000337331 PDSS1Q5T2R2 415 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 FRMPD2BQ6IN97 320 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 C9orf62Q8N4C0 152 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 OR2T33Q8NG76 320 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 OR52N2Q8NGI0 321 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 ZDHHC1Q8WTX9 485 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 TRMT61AQ96FX7 289 aaKnown RBP15.15■□□□□ 0.02
NPHP3-201ENST00000337331 JSRP1Q96MG2 331 aaPredicted RBP15.15■□□□□ 0.02
NPHP3-201ENST00000337331 CDH10Q9Y6N8 788 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 CACNA1CQ13936 2221 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 SCDO00767 359 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 CSF2RAP15509 400 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 ATP5A1P25705 553 aaKnown RBP15.15■□□□□ 0.02
NPHP3-201ENST00000337331 HAAOP46952 286 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 RNF144AP50876 292 aaPredicted RBP15.15■□□□□ 0.02
NPHP3-201ENST00000337331 WNT4P56705 351 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 MICAQ29983 383 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 LEXMQ3ZCV2 418 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 BCDIN3DQ7Z5W3 292 aaKnown RBP15.15■□□□□ 0.02
NPHP3-201ENST00000337331 ZNF615Q8N8J6 731 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 FIBINQ8TAL6 211 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 CST11Q9H112 138 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 R3HDMLQ9H3Y0 253 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 OR5K3A6NET4 321 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 DSC1Q08554 894 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 RAB41Q5JT25 222 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 C12orf76Q8N812 135 aaPredicted RBP15.15■□□□□ 0.02
NPHP3-201ENST00000337331 GPR26Q8NDV2 337 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 IER2Q9BTL4 223 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 PGAP2Q9UHJ9 254 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 GPR52Q9Y2T5 361 aa15.15■□□□□ 0.02
NPHP3-201ENST00000337331 PCM1Q15154 2024 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 TOGARAM1Q9Y4F4 1720 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 A0A1W2PP55 124 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 C5orf51A6NDU8 294 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 PRAMEF2O60811 474 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 RPS25P62851 125 aaKnown RBP15.14■□□□□ 0.01
NPHP3-201ENST00000337331 ZNF600Q6ZNG1 722 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 OR4M2Q8NGB6 313 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 CREB3L4Q8TEY5 395 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 TM9SF4Q92544 642 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 SLC25A46Q96AG3 418 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 C7orf34Q96L11 122 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 TMEM43Q9BTV4 400 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 LIPT1Q9Y234 373 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 GRXCR2A6NFK2 248 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 WASH4PA8MWX3 477 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 KHNYNO15037 678 aaKnown RBP15.14■□□□□ 0.01
NPHP3-201ENST00000337331 ZNF254O75437 659 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 ZNF273Q14593 569 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 GSG1LQ6UXU4 331 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 NRSN1Q8IZ57 195 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 TEX26Q8N6G2 289 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 NIPSNAP1Q9BPW8 284 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 FBXL3Q9UKT7 428 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 AP1M2Q9Y6Q5 423 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 HYKKA2RU49 373 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 LATS1O95835 1130 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 MFSD13AQ14CX5 517 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 SCGB2B2Q4G0G5 96 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 KCTD11Q693B1 232 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 NRROSQ86YC3 692 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 KHSRPQ92945 711 aaKnown RBP eCLIP15.14■□□□□ 0.016e-7■■■■□ 22.3
NPHP3-201ENST00000337331 UPRTQ96BW1 309 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 P2RY13Q9BPV8 354 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 C11orf49Q9H6J7 331 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 HRASLS2Q9NWW9 162 aa15.14■□□□□ 0.01
NPHP3-201ENST00000337331 A0A1B0GTL3 188 aa15.13■□□□□ 0.01
NPHP3-201ENST00000337331 RBMXL2O75526 392 aaKnown RBP15.13■□□□□ 0.01
NPHP3-201ENST00000337331 GJB3O75712 270 aa15.13■□□□□ 0.01
NPHP3-201ENST00000337331 ZNF140P52738 457 aaPredicted RBP15.13■□□□□ 0.01
NPHP3-201ENST00000337331 TAS2R43P59537 309 aa15.13■□□□□ 0.01
NPHP3-201ENST00000337331 MLLT11Q13015 90 aaPredicted RBP15.13■□□□□ 0.01
NPHP3-201ENST00000337331 RGNQ15493 299 aa15.13■□□□□ 0.01
NPHP3-201ENST00000337331 PRRT3Q5FWE3 981 aa15.13■□□□□ 0.01
NPHP3-201ENST00000337331 PRAMEF17Q5VTA0 474 aa15.13■□□□□ 0.01
NPHP3-201ENST00000337331 CD276Q5ZPR3 534 aa15.13■□□□□ 0.01
NPHP3-201ENST00000337331 RELL2Q8NC24 303 aaPredicted RBP15.13■□□□□ 0.01
NPHP3-201ENST00000337331 OR2L3Q8NG85 312 aa15.13■□□□□ 0.01
NPHP3-201ENST00000337331 OR1M1Q8NGA1 313 aa15.13■□□□□ 0.01
NPHP3-201ENST00000337331 GIMAP1-GIMAP5A0A087WTJ2 511 aa15.13■□□□□ 0.01
NPHP3-201ENST00000337331 VEGFDO43915 354 aa15.13■□□□□ 0.01
NPHP3-201ENST00000337331 CSO75390 466 aaKnown RBP15.13■□□□□ 0.01
NPHP3-201ENST00000337331 C6P13671 934 aa15.13■□□□□ 0.01
NPHP3-201ENST00000337331 ZNF91Q05481 1191 aa15.13■□□□□ 0.01
NPHP3-201ENST00000337331 POU4F2Q12837 409 aa15.13■□□□□ 0.01
NPHP3-201ENST00000337331 DECR1Q16698 335 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms