RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 ANKRD33BA6NCL7 494 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 PVRP15151 417 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 BDKRB2P30411 391 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 RPS5P46782 204 aaKnown RBP11.91□□□□□ -0.5
SDC3-201ENST00000336798 IDH3GP51553 393 aaPredicted RBP11.91□□□□□ -0.5
SDC3-201ENST00000336798 EMP2P54851 167 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 FGL1Q08830 312 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 MOB3CQ70IA8 216 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 KCTD20Q7Z5Y7 419 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 TECPR1Q7Z6L1 1165 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 OR4K5Q8NGD3 323 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 OR4K15Q8NH41 348 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 LRIG1Q96JA1 1093 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 SLC2A13Q96QE2 648 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 KLHL13Q9P2N7 655 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 ONECUT3O60422 494 aaPredicted RBP11.91□□□□□ -0.5
SDC3-201ENST00000336798 ATG12O94817 140 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 EPOP01588 193 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 SOX9P48436 509 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 BMXP51813 675 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 PPP5CP53041 499 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 PIGCQ92535 297 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 RHBDF1Q96CC6 855 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 NMNAT1Q9HAN9 279 aaPredicted RBP11.91□□□□□ -0.5
SDC3-201ENST00000336798 TRAPPC13A5PLN9 417 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 ZIC2O95409 532 aaPredicted RBP11.91□□□□□ -0.5
SDC3-201ENST00000336798 FAM163BP0C2L3 166 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 ZNF529Q6P280 563 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 KDELC1Q6UW63 502 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 ACBD4Q8NC06 268 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 GIMAP5Q96F15 307 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 TXNDC15Q96J42 360 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 SERINC2Q96SA4 455 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 POLHQ9Y253 713 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 PHYHO14832 338 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 SERPINE2P07093 398 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 BMPR1AP36894 532 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 RNF151Q2KHN1 245 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 CMTM1Q8IZ96 169 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 GTPBP8Q8N3Z3 284 aaPredicted RBP11.91□□□□□ -0.5
SDC3-201ENST00000336798 NPWQ8N729 165 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 LMNTD1Q8N9Z9 388 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 OR52R1Q8NGF1 315 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 OR5W2Q8NH69 310 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 MYLIPQ8WY64 445 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 TOE1Q96GM8 510 aaKnown RBP11.91□□□□□ -0.5
SDC3-201ENST00000336798 BIRC8Q96P09 236 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 APOOQ9BUR5 198 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 ALG8Q9BVK2 526 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 CACNG6Q9BXT2 260 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 TRAV27A0A087WT01 109 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 DVL2O14641 736 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 ARPC5O15511 151 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 SORBS2O94875 1100 aaKnown RBP11.91□□□□□ -0.5
SDC3-201ENST00000336798 ARHGEF15O94989 841 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 ZNF44P15621 663 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 TNFSF4P23510 183 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 DNAJB1P25685 340 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 SSTP61278 116 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 CPOQ8IVL8 374 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 CCDC71LQ8N9Z2 235 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 BMFQ96LC9 184 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 ACKR4Q9NPB9 350 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 GPATCH2Q9NW75 528 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 PISDQ9UG56 409 aa11.91□□□□□ -0.5
SDC3-201ENST00000336798 F8W036 122 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 RAB3AP20336 220 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 FDXRP22570 491 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 CRHBPP24387 322 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 ETV4P43268 484 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 BLOC1S1P78537 153 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 TCTE1Q5JU00 501 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 KDM1BQ8NB78 822 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 CCM2LQ9NUG4 571 aaPredicted RBP11.9□□□□□ -0.5
SDC3-201ENST00000336798 SPATA31D1Q6ZQQ2 1576 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 ARHGEF28Q8N1W1 1705 aaKnown RBP11.9□□□□□ -0.5
SDC3-201ENST00000336798 H0YAE9 185 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 RAB27BO00194 218 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 PABPC4LP0CB38 370 aaKnown RBP11.9□□□□□ -0.5
SDC3-201ENST00000336798 FUT1P19526 365 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 ZNF33AQ06730 810 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 GPR50Q13585 617 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 PTPRRQ15256 657 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 BORAQ6PGQ7 559 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 MCATQ8IVS2 390 aaKnown RBP11.9□□□□□ -0.5
SDC3-201ENST00000336798 WDTC1Q8N5D0 677 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 NDNFQ8TB73 568 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 HHIPL1Q96JK4 782 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 MKRN2Q9H000 416 aaKnown RBP11.9□□□□□ -0.5
SDC3-201ENST00000336798 MMP28Q9H239 520 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 SMOXQ9NWM0 555 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 MRC1P22897 1456 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 CD300LBA8K4G0 201 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 HBQ1P09105 142 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 SLC22A6Q4U2R8 563 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 TMEM31Q5JXX7 168 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 CLVS2Q5SYC1 327 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 CCNJQ5T5M9 372 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 CD163Q86VB7 1156 aa11.9□□□□□ -0.5
SDC3-201ENST00000336798 RHEBL1Q8TAI7 183 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms