RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 SNX3O60493 162 aa14.36□□□□□ -0.11
CLN3-201ENST00000333496 DIAPH2O60879 1101 aa14.36□□□□□ -0.11
CLN3-201ENST00000333496 CLDN14O95500 239 aa14.36□□□□□ -0.11
CLN3-201ENST00000333496 C1QCP02747 245 aa14.36□□□□□ -0.11
CLN3-201ENST00000333496 NGFRP08138 427 aa14.36□□□□□ -0.11
CLN3-201ENST00000333496 TBXA2RP21731 343 aa14.36□□□□□ -0.11
CLN3-201ENST00000333496 DPP4P27487 766 aa14.36□□□□□ -0.11
CLN3-201ENST00000333496 S100A3P33764 101 aa14.36□□□□□ -0.11
CLN3-201ENST00000333496 DCTP40126 519 aa14.36□□□□□ -0.11
CLN3-201ENST00000333496 RPS26P62854 115 aaKnown RBP14.36□□□□□ -0.11
CLN3-201ENST00000333496 PDCD4Q53EL6 469 aaKnown RBP14.36□□□□□ -0.11
CLN3-201ENST00000333496 SEM1Q6ZVN7 128 aa14.36□□□□□ -0.11
CLN3-201ENST00000333496 OR4K17Q8NGC6 315 aa14.36□□□□□ -0.11
CLN3-201ENST00000333496 TBL1XR1Q9BZK7 514 aa14.36□□□□□ -0.11
CLN3-201ENST00000333496 SDHAF3Q9NRP4 125 aa14.36□□□□□ -0.11
CLN3-201ENST00000333496 BTNL2Q9UIR0 455 aa14.36□□□□□ -0.11
CLN3-201ENST00000333496 PCDHGB4Q9UN71 923 aa14.36□□□□□ -0.11
CLN3-201ENST00000333496 IGLV3-32A0A0A0MS00 114 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 AHRRA9YTQ3 701 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 ACTL6AO96019 429 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 PGRP06401 933 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 HOXD4P09016 255 aaPredicted RBP14.35□□□□□ -0.11
CLN3-201ENST00000333496 IDO1P14902 403 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 MATN1P21941 496 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 HTR1EP28566 365 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 ADH7P40394 386 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 CLK3P49761 638 aaKnown RBP14.35□□□□□ -0.11
CLN3-201ENST00000333496 CASP9P55211 416 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 DSCR4P56555 118 aaPredicted RBP14.35□□□□□ -0.11
CLN3-201ENST00000333496 B3GALT5-AS1P59052 145 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 C17orf67Q0P5P2 114 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 ZNF630Q2M218 657 aaPredicted RBP14.35□□□□□ -0.11
CLN3-201ENST00000333496 DCST2Q5T1A1 773 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 SP5Q6BEB4 398 aaPredicted RBP14.35□□□□□ -0.11
CLN3-201ENST00000333496 BHLHB9Q6PI77 547 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 ACAD11Q709F0 780 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 TRPM8Q7Z2W7 1104 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 IFNEQ86WN2 208 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 CCDC71Q8IV32 467 aaPredicted RBP14.35□□□□□ -0.11
CLN3-201ENST00000333496 VPS37AQ8NEZ2 397 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 GOT1L1Q8NHS2 421 aaPredicted RBP14.35□□□□□ -0.11
CLN3-201ENST00000333496 CCDC115Q96NT0 180 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 ELAC2Q9BQ52 826 aaKnown RBP14.35□□□□□ -0.11
CLN3-201ENST00000333496 EBF4Q9BQW3 602 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 G6PC3Q9BUM1 346 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 SDR39U1Q9NRG7 319 aaPredicted RBP14.35□□□□□ -0.11
CLN3-201ENST00000333496 UBQLN4Q9NRR5 601 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 COQ3Q9NZJ6 369 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 DKKL1Q9UK85 242 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 CAMK2AQ9UQM7 478 aa14.35□□□□□ -0.11
CLN3-201ENST00000333496 RPH3AQ9Y2J0 694 aaPredicted RBP14.35□□□□□ -0.11
CLN3-201ENST00000333496 NPIPA5A0A0B4J1W7 369 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 A0A0G2JNJ9 132 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 NPIPA7E9PJI5 369 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 C19orf84I3L1E1 186 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 UBDO15205 165 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 TOXO94900 526 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 SOX30O94993 753 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 KRT16P08779 473 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 NPIPA8P0DM63 369 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 UQCRC2P22695 453 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 TCEA1P23193 301 aaKnown RBP14.34□□□□□ -0.11
CLN3-201ENST00000333496 LCN1P31025 176 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 CDKN2CP42773 168 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 STARP49675 285 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 GSTA3Q16772 222 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 ACSF3Q4G176 576 aaPredicted RBP14.34□□□□□ -0.11
CLN3-201ENST00000333496 PM20D2Q8IYS1 436 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 GATSQ8NAP1 163 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 OR9I1Q8NGQ6 314 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 MIPOL1Q8TD10 442 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 CA5BP1Q8WTZ4 195 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 SLC35G5Q96KT7 338 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 OR52E6Q96RD3 313 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 SDF2Q99470 211 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 INPP5KQ9BT40 448 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 Q9UFV3 132 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 PKDREJQ9NTG1 2253 aa14.34□□□□□ -0.11
CLN3-201ENST00000333496 CFAP73A6NFT4 308 aa14.33□□□□□ -0.11
CLN3-201ENST00000333496 NDUFB5O43674 189 aa14.33□□□□□ -0.11
CLN3-201ENST00000333496 SLC22A3O75751 556 aa14.33□□□□□ -0.11
CLN3-201ENST00000333496 TGDSO95455 350 aa14.33□□□□□ -0.11
CLN3-201ENST00000333496 EPPINO95925 133 aa14.33□□□□□ -0.11
CLN3-201ENST00000333496 CPN1P15169 458 aa14.33□□□□□ -0.11
CLN3-201ENST00000333496 PTGER4P35408 488 aa14.33□□□□□ -0.11
CLN3-201ENST00000333496 IDH3AP50213 366 aa14.33□□□□□ -0.11
CLN3-201ENST00000333496 LHX2P50458 406 aa14.33□□□□□ -0.11
CLN3-201ENST00000333496 CD226Q15762 336 aa14.33□□□□□ -0.11
CLN3-201ENST00000333496 SAXO2Q658L1 398 aa14.33□□□□□ -0.11
CLN3-201ENST00000333496 CGB2Q6NT52 195 aa14.33□□□□□ -0.11
CLN3-201ENST00000333496 GLB1L3Q8NCI6 653 aaPredicted RBP14.33□□□□□ -0.11
CLN3-201ENST00000333496 OR10Q1Q8NGQ4 319 aa14.33□□□□□ -0.11
CLN3-201ENST00000333496 LILRB4Q8NHJ6 448 aa14.33□□□□□ -0.11
CLN3-201ENST00000333496 C1GALT1C1Q96EU7 318 aa14.33□□□□□ -0.11
CLN3-201ENST00000333496 KLHDC3Q9BQ90 382 aa14.33□□□□□ -0.11
CLN3-201ENST00000333496 OR51I1Q9H343 314 aa14.33□□□□□ -0.11
CLN3-201ENST00000333496 ZIM2Q9NZV7 527 aa14.33□□□□□ -0.11
CLN3-201ENST00000333496 A0A1W2PQD3 144 aa14.33□□□□□ -0.12
CLN3-201ENST00000333496 NPIPB9F8W1W9 429 aa14.33□□□□□ -0.12
CLN3-201ENST00000333496 GMFGO60234 142 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms