RNA–Protein interactions for RNA: ENST00000317516.11

TPM1-203, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 738 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-203ENST00000317516 BTBD2Q9BX70 525 aa16.02■□□□□ 0.16
TPM1-203ENST00000317516 PINK1Q9BXM7 581 aa16.02■□□□□ 0.16
TPM1-203ENST00000317516 DUSP22Q9NRW4 184 aa16.02■□□□□ 0.16
TPM1-203ENST00000317516 GIN1Q9NXP7 522 aa16.02■□□□□ 0.16
TPM1-203ENST00000317516 ST6GALNAC2Q9UJ37 374 aa16.02■□□□□ 0.16
TPM1-203ENST00000317516 MED12Q93074 2177 aa16.02■□□□□ 0.15
TPM1-203ENST00000317516 RGS16O15492 202 aaPredicted RBP16.01■□□□□ 0.15
TPM1-203ENST00000317516 GMFGO60234 142 aa16.01■□□□□ 0.15
TPM1-203ENST00000317516 SMNDC1O75940 238 aaKnown RBP eCLIP16.01■□□□□ 0.151e-8■■□□□ 11.9
TPM1-203ENST00000317516 HMGN2P05204 90 aaKnown RBP16.01■□□□□ 0.15
TPM1-203ENST00000317516 LAMP1P11279 417 aa16.01■□□□□ 0.15
TPM1-203ENST00000317516 EFNA1P20827 205 aaPredicted RBP16.01■□□□□ 0.15
TPM1-203ENST00000317516 CCT3P49368 545 aaKnown RBP16.01■□□□□ 0.15
TPM1-203ENST00000317516 PCYT1AP49585 367 aa16.01■□□□□ 0.15
TPM1-203ENST00000317516 SUCLG1P53597 346 aaKnown RBP16.01■□□□□ 0.15
TPM1-203ENST00000317516 POU6F2P78424 691 aaPredicted RBP16.01■□□□□ 0.15
TPM1-203ENST00000317516 KRT71Q3SY84 523 aa16.01■□□□□ 0.15
TPM1-203ENST00000317516 SPDYE7PQ495Y7 208 aa16.01■□□□□ 0.15
TPM1-203ENST00000317516 MREGQ8N565 214 aa16.01■□□□□ 0.15
TPM1-203ENST00000317516 CHDHQ8NE62 594 aaPredicted RBP16.01■□□□□ 0.15
TPM1-203ENST00000317516 OR56A1Q8NGH5 318 aa16.01■□□□□ 0.15
TPM1-203ENST00000317516 FBXO30Q8TB52 745 aa16.01■□□□□ 0.15
TPM1-203ENST00000317516 ACTRT2Q8TDY3 377 aa16.01■□□□□ 0.15
TPM1-203ENST00000317516 SMPDL3BQ92485 455 aa16.01■□□□□ 0.15
TPM1-203ENST00000317516 C16orf58Q96GQ5 468 aa16.01■□□□□ 0.15
TPM1-203ENST00000317516 C3orf30Q96M34 536 aa16.01■□□□□ 0.15
TPM1-203ENST00000317516 STACQ99469 402 aa16.01■□□□□ 0.15
TPM1-203ENST00000317516 FOXC2Q99958 501 aa16.01■□□□□ 0.15
TPM1-203ENST00000317516 SLC39A3Q9BRY0 314 aa16.01■□□□□ 0.15
TPM1-203ENST00000317516 HOXD1Q9GZZ0 328 aa16.01■□□□□ 0.15
TPM1-203ENST00000317516 PIGUQ9H490 435 aa16.01■□□□□ 0.15
TPM1-203ENST00000317516 CCM2LQ9NUG4 571 aaPredicted RBP16.01■□□□□ 0.15
TPM1-203ENST00000317516 PAQR5Q9NXK6 330 aaPredicted RBP16.01■□□□□ 0.15
TPM1-203ENST00000317516 FAF1Q9UNN5 650 aaPredicted RBP16.01■□□□□ 0.15
TPM1-203ENST00000317516 SH3D21A4FU49 640 aa16■□□□□ 0.15
TPM1-203ENST00000317516 SKAP2O75563 359 aaPredicted RBP16■□□□□ 0.15
TPM1-203ENST00000317516 SNUPNO95149 360 aaKnown RBP16■□□□□ 0.15
TPM1-203ENST00000317516 FCGR2AP12318 317 aa16■□□□□ 0.15
TPM1-203ENST00000317516 CREB1P16220 341 aa16■□□□□ 0.15
TPM1-203ENST00000317516 ZNF17P17021 662 aa16■□□□□ 0.15
TPM1-203ENST00000317516 ATP6V1C1P21283 382 aa16■□□□□ 0.15
TPM1-203ENST00000317516 ETV4P43268 484 aa16■□□□□ 0.15
TPM1-203ENST00000317516 ZNF41P51814 821 aaPredicted RBP16■□□□□ 0.15
TPM1-203ENST00000317516 CLDN15P56746 228 aa16■□□□□ 0.15
TPM1-203ENST00000317516 CLDN20P56880 219 aa16■□□□□ 0.15
TPM1-203ENST00000317516 LASP1Q14847 261 aaKnown RBP16■□□□□ 0.15
TPM1-203ENST00000317516 PTGR1Q14914 329 aa16■□□□□ 0.15
TPM1-203ENST00000317516 PON3Q15166 354 aa16■□□□□ 0.15
TPM1-203ENST00000317516 BHLHB9Q6PI77 547 aa16■□□□□ 0.15
TPM1-203ENST00000317516 CAMKMTQ7Z624 323 aa16■□□□□ 0.15
TPM1-203ENST00000317516 GALNT10Q86SR1 603 aa16■□□□□ 0.15
TPM1-203ENST00000317516 WDR75Q8IWA0 830 aaKnown RBP16■□□□□ 0.15
TPM1-203ENST00000317516 METTL25Q8N6Q8 603 aa16■□□□□ 0.15
TPM1-203ENST00000317516 PSMA8Q8TAA3 256 aa16■□□□□ 0.15
TPM1-203ENST00000317516 ADAMTS15Q8TE58 950 aa16■□□□□ 0.15
TPM1-203ENST00000317516 FIG4Q92562 907 aa16■□□□□ 0.15
TPM1-203ENST00000317516 ZBTB8AQ96BR9 441 aa16■□□□□ 0.15
TPM1-203ENST00000317516 MOAP1Q96BY2 351 aa16■□□□□ 0.15
TPM1-203ENST00000317516 COQ8BQ96D53 544 aa16■□□□□ 0.15
TPM1-203ENST00000317516 STARD4Q96DR4 205 aa16■□□□□ 0.15
TPM1-203ENST00000317516 PGM2Q96G03 612 aa16■□□□□ 0.15
TPM1-203ENST00000317516 ZIM3Q96PE6 472 aa16■□□□□ 0.15
TPM1-203ENST00000317516 C1orf50Q9BV19 199 aa16■□□□□ 0.15
TPM1-203ENST00000317516 ACTRT3Q9BYD9 372 aa16■□□□□ 0.15
TPM1-203ENST00000317516 PRRG4Q9BZD6 226 aa16■□□□□ 0.15
TPM1-203ENST00000317516 NEUROD4Q9HD90 331 aa16■□□□□ 0.15
TPM1-203ENST00000317516 SIRT3Q9NTG7 399 aaPredicted RBP16■□□□□ 0.15
TPM1-203ENST00000317516 GIMAP2Q9UG22 337 aa16■□□□□ 0.15
TPM1-203ENST00000317516 VDAC3Q9Y277 283 aa16■□□□□ 0.15
TPM1-203ENST00000317516 A0A1W2PQD3 144 aa15.99■□□□□ 0.15
TPM1-203ENST00000317516 H0YC42 278 aa15.99■□□□□ 0.15
TPM1-203ENST00000317516 H3BNH8 94 aa15.99■□□□□ 0.15
TPM1-203ENST00000317516 CFLARO15519 480 aa15.99■□□□□ 0.15
TPM1-203ENST00000317516 ARRB2P32121 409 aa15.99■□□□□ 0.15
TPM1-203ENST00000317516 CPOXP36551 454 aa15.99■□□□□ 0.15
TPM1-203ENST00000317516 TPD52P55327 224 aaPredicted RBP15.99■□□□□ 0.15
TPM1-203ENST00000317516 EMX2Q04743 252 aa15.99■□□□□ 0.15
TPM1-203ENST00000317516 TP53BP2Q13625 1128 aa15.99■□□□□ 0.15
TPM1-203ENST00000317516 TMEM44Q2T9K0 475 aa15.99■□□□□ 0.15
TPM1-203ENST00000317516 SMU1Q2TAY7 513 aa15.99■□□□□ 0.15
TPM1-203ENST00000317516 CDC73Q6P1J9 531 aa15.99■□□□□ 0.15
TPM1-203ENST00000317516 KIRREL3Q8IZU9 778 aa15.99■□□□□ 0.15
TPM1-203ENST00000317516 GTPBP8Q8N3Z3 284 aaPredicted RBP15.99■□□□□ 0.15
TPM1-203ENST00000317516 GATSQ8NAP1 163 aa15.99■□□□□ 0.15
TPM1-203ENST00000317516 ZNF527Q8NB42 609 aa15.99■□□□□ 0.15
TPM1-203ENST00000317516 FNDC9Q8TBE3 224 aa15.99■□□□□ 0.15
TPM1-203ENST00000317516 ZNF845Q96IR2 970 aaPredicted RBP15.99■□□□□ 0.15
TPM1-203ENST00000317516 PARD6BQ9BYG5 372 aa15.99■□□□□ 0.15
TPM1-203ENST00000317516 BHLHE41Q9C0J9 482 aaPredicted RBP15.99■□□□□ 0.15
TPM1-203ENST00000317516 LIME1Q9H400 295 aa15.99■□□□□ 0.15
TPM1-203ENST00000317516 RNF122Q9H9V4 155 aa15.99■□□□□ 0.15
TPM1-203ENST00000317516 SSU72Q9NP77 194 aaKnown RBP15.99■□□□□ 0.15
TPM1-203ENST00000317516 ELOVL5Q9NYP7 299 aa15.99■□□□□ 0.15
TPM1-203ENST00000317516 UQCRHLA0A096LP55 91 aa15.98■□□□□ 0.15
TPM1-203ENST00000317516 EIF1AYO14602 144 aaKnown RBP15.98■□□□□ 0.15
TPM1-203ENST00000317516 BIRC5O15392 142 aa15.98■□□□□ 0.15
TPM1-203ENST00000317516 SERPINE1P05121 402 aa15.98■□□□□ 0.15
TPM1-203ENST00000317516 MYZAPP0CAP1 466 aa15.98■□□□□ 0.15
TPM1-203ENST00000317516 ME2P23368 584 aa15.98■□□□□ 0.15
TPM1-203ENST00000317516 KIR2DL2P43627 348 aaPredicted RBP15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms