RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ZNF763Q0D2J5 394 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 GPR17Q13304 367 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 SCARB2Q14108 478 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 MED27Q6P2C8 311 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 ZNF584Q8IVC4 421 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 ACVR1CQ8NER5 493 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 PSMG2Q969U7 264 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 SMIM3Q9BZL3 60 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 MRPS18AQ9NVS2 196 aaKnown RBP6.06□□□□□ -1.44
VPS35-201ENST00000299138 NUFIP1Q9UHK0 495 aaKnown RBP6.06□□□□□ -1.44
VPS35-201ENST00000299138 DPP7Q9UHL4 492 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 CDK5RAP2Q96SN8 1893 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 FOXE1O00358 373 aaPredicted RBP6.06□□□□□ -1.44
VPS35-201ENST00000299138 RENP00797 406 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 HTR1AP08908 422 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 ANXA4P09525 319 aaPredicted RBP6.06□□□□□ -1.44
VPS35-201ENST00000299138 IFNGR1P15260 489 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 RBMS1P29558 406 aaKnown RBP6.06□□□□□ -1.44
VPS35-201ENST00000299138 TIA1P31483 386 aaKnown RBP eCLIP6.06□□□□□ -1.446e-6■□□□□ 11.3
VPS35-201ENST00000299138 MTNR1BP49286 362 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 SCAND1P57086 179 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 CARD18P57730 90 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 PPA1Q15181 289 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 RSU1Q15404 277 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 ENPP6Q6UWR7 440 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 GALNT10Q86SR1 603 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 CMIPQ8IY22 773 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 KDM8Q8N371 416 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 SHKBP1Q8TBC3 707 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 LINC01599Q8WXQ3 324 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 NINJ1Q92982 152 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 APOLD1Q96LR9 279 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 HINT2Q9BX68 163 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 DPEP2Q9H4A9 486 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 SLC25A19Q9HC21 320 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 MARCH4Q9P2E8 410 aaPredicted RBP6.06□□□□□ -1.44
VPS35-201ENST00000299138 KIF25Q9UIL4 384 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 FKBPLQ9UIM3 349 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 FZD4Q9ULV1 537 aa6.06□□□□□ -1.44
VPS35-201ENST00000299138 GPR32O75388 356 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 RBBP9O75884 186 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 TFP02787 698 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 CSF3P09919 207 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 AMD1P17707 334 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 CR2P20023 1033 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 GABRA5P31644 462 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 GRK6P43250 576 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 ARSDP51689 593 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 SF1Q15637 639 aaKnown RBP6.05□□□□□ -1.44
VPS35-201ENST00000299138 CTU2Q2VPK5 515 aaKnown RBP6.05□□□□□ -1.44
VPS35-201ENST00000299138 POM121L1PQ3SYA9 428 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 OR2T11Q8NH01 316 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 SLC25A46Q96AG3 418 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 OR2A14Q96R47 310 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 TMEM175Q9BSA9 504 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 PINK1Q9BXM7 581 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 SGK2Q9HBY8 427 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 NCDNQ9UBB6 729 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 HES2Q9Y543 173 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 TMEM235A6NFC5 223 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 J3KR12 359 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 SLC25A14O95258 325 aaPredicted RBP6.05□□□□□ -1.44
VPS35-201ENST00000299138 PRAMEF12O95522 483 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 FGF19O95750 216 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 IL3P08700 152 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 DRD5P21918 477 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 NFATC2Q13469 925 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 C3P1Q6ZMU1 363 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 C16orf59Q7L2K0 433 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 SERPINA9Q86WD7 417 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 ZCCHC14Q8WYQ9 949 aaKnown RBP6.05□□□□□ -1.44
VPS35-201ENST00000299138 MMP28Q9H239 520 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 FGF20Q9NP95 211 aaPredicted RBP6.05□□□□□ -1.44
VPS35-201ENST00000299138 PURGQ9UJV8 347 aaKnown RBP6.05□□□□□ -1.44
VPS35-201ENST00000299138 RFXAPO00287 272 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 SMAD6O43541 496 aaKnown RBP6.05□□□□□ -1.44
VPS35-201ENST00000299138 HCRTR2O43614 444 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 XYLBO75191 536 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 SC5DO75845 299 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 F10P00742 488 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 ZNF286BP0CG31 522 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 EPHA1P21709 976 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 ADCYAP1R1P41586 468 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 DAPP51397 102 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 PPP1R8Q12972 351 aaKnown RBP6.05□□□□□ -1.44
VPS35-201ENST00000299138 RAB32Q13637 225 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 CTXN3Q4LDR2 81 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 BEX5Q5H9J7 111 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 TPGS2Q68CL5 300 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 OR8D1Q8WZ84 308 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 CSF3RQ99062 836 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 EPHX3Q9H6B9 360 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 NLKQ9UBE8 527 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 OSGIN2Q9Y236 505 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 NOX1Q9Y5S8 564 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 CDH10Q9Y6N8 788 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 DUXAA6NLW8 204 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 PI15O43692 258 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 MMP20O60882 483 aa6.05□□□□□ -1.44
VPS35-201ENST00000299138 SLC22A5O76082 557 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms