RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 PGS1Q32NB8 556 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 CDC73Q6P1J9 531 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 AAGABQ6PD74 315 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 ARSKQ6UWY0 536 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 ZZZ3Q8IYH5 903 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 CLECL1Q8IZS7 167 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 GATSQ8NAP1 163 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 OR5AK3PQ8NH89 298 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 UCN2Q96RP3 112 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 PRPF18Q99633 342 aaKnown RBP13.04□□□□□ -0.32
HMGN3-201ENST00000275036 ZNF559Q9BR84 538 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 BTBD2Q9BX70 525 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 PIGUQ9H490 435 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 MEAF6Q9HAF1 191 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 DUSP22Q9NRW4 184 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 ZNF629Q9UEG4 869 aaPredicted RBP13.04□□□□□ -0.32
HMGN3-201ENST00000275036 ZNF337Q9Y3M9 751 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 OR2M5A3KFT3 312 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 SHISA8B8ZZ34 492 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 SYT5O00445 386 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 SDHDO14521 159 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 SCN2BO60939 215 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 SNNO75324 88 aaPredicted RBP13.03□□□□□ -0.32
HMGN3-201ENST00000275036 ERLIN1O75477 346 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 NGFRP08138 427 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 ALDOCP09972 364 aaKnown RBP13.03□□□□□ -0.32
HMGN3-201ENST00000275036 UQCRC1P31930 480 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 CLK3P49761 638 aaKnown RBP13.03□□□□□ -0.32
HMGN3-201ENST00000275036 ASCL1P50553 236 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 SUCLG1P53597 346 aaKnown RBP13.03□□□□□ -0.32
HMGN3-201ENST00000275036 PHC1P78364 1004 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 C17orf67Q0P5P2 114 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 GANABQ14697 944 aaKnown RBP13.03□□□□□ -0.32
HMGN3-201ENST00000275036 LSM12Q3MHD2 195 aaKnown RBP13.03□□□□□ -0.32
HMGN3-201ENST00000275036 FBXL19-AS1Q494R0 122 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 RAET1LQ5VY80 246 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 CLEC4FQ8N1N0 589 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 NATD1Q8N6N6 113 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 OR56A1Q8NGH5 318 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 SFXN5Q8TD22 340 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 DTNBP1Q96EV8 351 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 CHMP6Q96FZ7 201 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 STACQ99469 402 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 NPAS1Q99742 590 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 ACTRT3Q9BYD9 372 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 SERHL2Q9H4I8 314 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 NEUROD4Q9HD90 331 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 GIN1Q9NXP7 522 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 CRIM1Q9NZV1 1036 aa13.03□□□□□ -0.32
HMGN3-201ENST00000275036 NPIPA5A0A0B4J1W7 369 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 NPIPA7E9PJI5 369 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 CFLARO15519 480 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 HCRTR2O43614 444 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 NDUFB5O43674 189 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 TGM6O95932 706 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 NPIPA8P0DM63 369 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 TMIGD3P0DMS9 266 aaPredicted RBP13.02□□□□□ -0.33
HMGN3-201ENST00000275036 LBPP18428 481 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 CTSSP25774 331 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 RNF144AP50876 292 aaPredicted RBP13.02□□□□□ -0.33
HMGN3-201ENST00000275036 SLC18A1P54219 525 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 RPS26P62854 115 aaKnown RBP13.02□□□□□ -0.33
HMGN3-201ENST00000275036 CD226Q15762 336 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 BCL2A1Q16548 175 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 TMEM44Q2T9K0 475 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 SPDYE7PQ495Y7 208 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 TMEM200AQ86VY9 491 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 UBQLNLQ8IYU4 475 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 OR8J2Q8NGG1 315 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 OR5D16Q8NGK9 328 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 WNT2BQ93097 391 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 TEX37Q96LM6 180 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 OR7D2Q96RA2 312 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 DPY30Q9C005 99 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 PTGES2Q9H7Z7 377 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 UBQLN4Q9NRR5 601 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 JKAMPQ9P055 326 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 VDAC3Q9Y277 283 aa13.02□□□□□ -0.33
HMGN3-201ENST00000275036 MAP1AP78559 2803 aaPredicted RBP13.02□□□□□ -0.33
HMGN3-201ENST00000275036 RNASET2O00584 256 aaKnown RBP13.01□□□□□ -0.33
HMGN3-201ENST00000275036 OIP5O43482 229 aa13.01□□□□□ -0.33
HMGN3-201ENST00000275036 CTAG2O75638 210 aa13.01□□□□□ -0.33
HMGN3-201ENST00000275036 RCBTB2O95199 551 aa13.01□□□□□ -0.33
HMGN3-201ENST00000275036 PEPDP12955 493 aa13.01□□□□□ -0.33
HMGN3-201ENST00000275036 LCN1P31025 176 aa13.01□□□□□ -0.33
HMGN3-201ENST00000275036 SOAT1P35610 550 aa13.01□□□□□ -0.33
HMGN3-201ENST00000275036 DGKQP52824 942 aa13.01□□□□□ -0.33
HMGN3-201ENST00000275036 CLDN20P56880 219 aa13.01□□□□□ -0.33
HMGN3-201ENST00000275036 CASP8Q14790 479 aa13.01□□□□□ -0.33
HMGN3-201ENST00000275036 DCST2Q5T1A1 773 aa13.01□□□□□ -0.33
HMGN3-201ENST00000275036 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.01□□□□□ -0.33
HMGN3-201ENST00000275036 OGFOD2Q6N063 350 aa13.01□□□□□ -0.33
HMGN3-201ENST00000275036 ANKRD46Q86W74 232 aa13.01□□□□□ -0.33
HMGN3-201ENST00000275036 LRRC34Q8IZ02 419 aa13.01□□□□□ -0.33
HMGN3-201ENST00000275036 KIRREL3Q8IZU9 778 aa13.01□□□□□ -0.33
HMGN3-201ENST00000275036 GCNT2Q8N0V5 402 aa13.01□□□□□ -0.33
HMGN3-201ENST00000275036 ADAMTS15Q8TE58 950 aa13.01□□□□□ -0.33
HMGN3-201ENST00000275036 RNASE6Q93091 150 aaKnown RBP13.01□□□□□ -0.33
HMGN3-201ENST00000275036 ARL8AQ96BM9 186 aa13.01□□□□□ -0.33
HMGN3-201ENST00000275036 MOAP1Q96BY2 351 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms