RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 POLR2J2Q9GZM3 115 aaKnown RBP13.02□□□□□ -0.32
SS18-201ENST00000269137 POLR2J3Q9H1A7 115 aaKnown RBP13.02□□□□□ -0.32
SS18-201ENST00000269137 ANKRD19PQ9H560 264 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.02□□□□□ -0.32
SS18-201ENST00000269137 KIF17Q9P2E2 1029 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 PADI1Q9ULC6 663 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 TMCC3Q9ULS5 477 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 ZFHX2Q9C0A1 2572 aaPredicted RBP13.02□□□□□ -0.33
SS18-201ENST00000269137 TRBV4-1A0A0J9YWV2 114 aa13.02□□□□□ -0.33
SS18-201ENST00000269137 A0A1W2PNU3 283 aaPredicted RBP13.02□□□□□ -0.33
SS18-201ENST00000269137 FAAHO00519 579 aa13.02□□□□□ -0.33
SS18-201ENST00000269137 AP3D1O14617 1153 aa13.02□□□□□ -0.33
SS18-201ENST00000269137 OXSR1O95747 527 aaPredicted RBP13.02□□□□□ -0.33
SS18-201ENST00000269137 CCNYL3P0C7X3 344 aa13.02□□□□□ -0.33
SS18-201ENST00000269137 CDH2P19022 906 aaPredicted RBP13.02□□□□□ -0.33
SS18-201ENST00000269137 ELAVL4P26378 380 aaKnown RBP13.02□□□□□ -0.33
SS18-201ENST00000269137 IFNA8P32881 189 aa13.02□□□□□ -0.33
SS18-201ENST00000269137 ZNF136P52737 540 aa13.02□□□□□ -0.33
SS18-201ENST00000269137 LIMK1P53667 647 aa13.02□□□□□ -0.33
SS18-201ENST00000269137 ZIK1Q3SY52 487 aaPredicted RBP13.02□□□□□ -0.33
SS18-201ENST00000269137 DCST1Q5T197 706 aa13.02□□□□□ -0.33
SS18-201ENST00000269137 C6orf15Q6UXA7 325 aaPredicted RBP13.02□□□□□ -0.33
SS18-201ENST00000269137 OR2Y1Q8NGV0 311 aa13.02□□□□□ -0.33
SS18-201ENST00000269137 OR8K3Q8NH51 312 aa13.02□□□□□ -0.33
SS18-201ENST00000269137 WDR36Q8NI36 951 aaKnown RBP13.02□□□□□ -0.33
SS18-201ENST00000269137 DIO2Q92813 273 aa13.02□□□□□ -0.33
SS18-201ENST00000269137 TP53INP1Q96A56 240 aa13.02□□□□□ -0.33
SS18-201ENST00000269137 VMP1Q96GC9 406 aa13.02□□□□□ -0.33
SS18-201ENST00000269137 GAL3ST4Q96RP7 486 aa13.02□□□□□ -0.33
SS18-201ENST00000269137 MESP1Q9BRJ9 268 aa13.02□□□□□ -0.33
SS18-201ENST00000269137 MAN2C1Q9NTJ4 1040 aa13.02□□□□□ -0.33
SS18-201ENST00000269137 FAM118AQ9NWS6 357 aa13.02□□□□□ -0.33
SS18-201ENST00000269137 SCOCQ9UIL1 159 aa13.02□□□□□ -0.33
SS18-201ENST00000269137 AHCTF1Q8WYP5 2266 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 TEX51A0A1B0GUA7 166 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 PMS2P1A4D2B8 440 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 C9orf172C9J069 976 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 SLC16A6O15403 523 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 OR5F1O95221 314 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 UMODP07911 640 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 GNAO1P09471 354 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 ITGAMP11215 1152 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 CBLP22681 906 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 TAS2R41P59536 307 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 RNF4P78317 190 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 PLAURQ03405 335 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 KCNAB2Q13303 367 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 FGFBP1Q14512 234 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 KLHL26Q53HC5 615 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 FGD3Q5JSP0 725 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 TMEM164Q5U3C3 297 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 HSDL2Q6YN16 418 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 RANBP3LQ86VV4 465 aaPredicted RBP13.01□□□□□ -0.33
SS18-201ENST00000269137 CACTIN-AS1Q8N1I8 211 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 LINC00471Q8N535 108 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 DEFB124Q8NES8 71 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 TOR1AIP2Q8NFQ8 470 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 OR4C3Q8NH37 302 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 NUBPLQ8TB37 319 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 SLC7A13Q8TCU3 470 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 LMF1Q96S06 567 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 MCHR1Q99705 422 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 UBQLN4Q9NRR5 601 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 KRT84Q9NSB2 600 aa13.01□□□□□ -0.33
SS18-201ENST00000269137 ZNF223Q9UK11 482 aaPredicted RBP13.01□□□□□ -0.33
SS18-201ENST00000269137 PTRH2Q9Y3E5 179 aaKnown RBP13.01□□□□□ -0.33
SS18-201ENST00000269137 CNOT1A5YKK6 2376 aaKnown RBP13□□□□□ -0.33
SS18-201ENST00000269137 SH3PXD2BA1X283 911 aa13□□□□□ -0.33
SS18-201ENST00000269137 DPPA5A6NC42 116 aa13□□□□□ -0.33
SS18-201ENST00000269137 PRKNO60260 465 aaPredicted RBP13□□□□□ -0.33
SS18-201ENST00000269137 MITFO75030 526 aaPredicted RBP13□□□□□ -0.33
SS18-201ENST00000269137 CYP7B1O75881 506 aa13□□□□□ -0.33
SS18-201ENST00000269137 RAB40ALP0C0E4 278 aa13□□□□□ -0.33
SS18-201ENST00000269137 ADH7P40394 386 aa13□□□□□ -0.33
SS18-201ENST00000269137 NR0B1P51843 470 aaKnown RBP13□□□□□ -0.33
SS18-201ENST00000269137 CHN2P52757 468 aa13□□□□□ -0.33
SS18-201ENST00000269137 SLC26A5P58743 744 aa13□□□□□ -0.33
SS18-201ENST00000269137 ST3GAL3Q11203 375 aa13□□□□□ -0.33
SS18-201ENST00000269137 SEC23BQ15437 767 aa13□□□□□ -0.33
SS18-201ENST00000269137 ENTPD8Q5MY95 495 aa13□□□□□ -0.33
SS18-201ENST00000269137 SLC34A3Q8N130 599 aa13□□□□□ -0.33
SS18-201ENST00000269137 ZNF555Q8NEP9 628 aa13□□□□□ -0.33
SS18-201ENST00000269137 CNOT9Q92600 299 aaKnown RBP13□□□□□ -0.33
SS18-201ENST00000269137 EFHD2Q96C19 240 aaPredicted RBP13□□□□□ -0.33
SS18-201ENST00000269137 PRR14Q9BWN1 585 aa13□□□□□ -0.33
SS18-201ENST00000269137 B3GNT4Q9C0J1 378 aa13□□□□□ -0.33
SS18-201ENST00000269137 TESQ9UGI8 421 aaKnown RBP13□□□□□ -0.33
SS18-201ENST00000269137 SERINC4A6NH21 518 aa12.99□□□□□ -0.33
SS18-201ENST00000269137 PROB1E7EW31 1015 aa12.99□□□□□ -0.33
SS18-201ENST00000269137 TSPAN2O60636 221 aa12.99□□□□□ -0.33
SS18-201ENST00000269137 SEC24DO94855 1032 aaPredicted RBP12.99□□□□□ -0.33
SS18-201ENST00000269137 IGHEP01854 428 aa12.99□□□□□ -0.33
SS18-201ENST00000269137 LYNP07948 512 aa12.99□□□□□ -0.33
SS18-201ENST00000269137 HOXC5Q00444 222 aa12.99□□□□□ -0.33
SS18-201ENST00000269137 TRAM2Q15035 370 aa12.99□□□□□ -0.33
SS18-201ENST00000269137 PODNL1Q6PEZ8 512 aa12.99□□□□□ -0.33
SS18-201ENST00000269137 PLEKHM3Q6ZWE6 761 aa12.99□□□□□ -0.33
SS18-201ENST00000269137 TIPARPQ7Z3E1 657 aaKnown RBP12.99□□□□□ -0.33
SS18-201ENST00000269137 GALNT5Q7Z7M9 940 aa12.99□□□□□ -0.33
SS18-201ENST00000269137 APLFQ8IW19 511 aaPredicted RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms