RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 GRM8O00222 908 aa24.01■■□□□ 1.43
SYNGAP1-227ENST00000638142 CWF19L2Q2TBE0 894 aaKnown RBP24.01■■□□□ 1.43
SYNGAP1-227ENST00000638142 PXDNQ92626 1479 aa24.01■■□□□ 1.43
SYNGAP1-227ENST00000638142 KCNJ4P48050 445 aa24■■□□□ 1.43
SYNGAP1-227ENST00000638142 PSME1Q06323 249 aa24■■□□□ 1.43
SYNGAP1-227ENST00000638142 VPS37CA5D8V6 355 aaPredicted RBP24■■□□□ 1.43
SYNGAP1-227ENST00000638142 DDX58O95786 925 aaKnown RBP24■■□□□ 1.43
SYNGAP1-227ENST00000638142 G3BP1Q13283 466 aaKnown RBP eCLIP24■■□□□ 1.43
SYNGAP1-227ENST00000638142 ZBTB7CA1YPR0 619 aa23.99■■□□□ 1.43
SYNGAP1-227ENST00000638142 SASH1O94885 1247 aa23.99■■□□□ 1.43
SYNGAP1-227ENST00000638142 NMIQ13287 307 aaPredicted RBP23.99■■□□□ 1.43
SYNGAP1-227ENST00000638142 GIMAP6Q6P9H5 292 aa23.99■■□□□ 1.43
SYNGAP1-227ENST00000638142 SUCLG2Q96I99 432 aa23.99■■□□□ 1.43
SYNGAP1-227ENST00000638142 TPCN1Q9ULQ1 816 aa23.99■■□□□ 1.43
SYNGAP1-227ENST00000638142 PDCP20941 246 aa23.98■■□□□ 1.43
SYNGAP1-227ENST00000638142 ANKRD1Q15327 319 aa23.98■■□□□ 1.43
SYNGAP1-227ENST00000638142 TPRNQ4KMQ1 711 aa23.98■■□□□ 1.43
SYNGAP1-227ENST00000638142 RNF20Q5VTR2 975 aa23.98■■□□□ 1.43
SYNGAP1-227ENST00000638142 EAF2Q96CJ1 260 aaPredicted RBP23.98■■□□□ 1.43
SYNGAP1-227ENST00000638142 FAM227BQ96M60 508 aa23.98■■□□□ 1.43
SYNGAP1-227ENST00000638142 SLC27A2O14975 620 aa23.98■■□□□ 1.43
SYNGAP1-227ENST00000638142 KAZALD1Q96I82 304 aa23.98■■□□□ 1.43
SYNGAP1-227ENST00000638142 LMTK3Q96Q04 1460 aa23.97■■□□□ 1.43
SYNGAP1-227ENST00000638142 NOLC1Q14978 699 aaKnown RBP eCLIP23.97■■□□□ 1.43
SYNGAP1-227ENST00000638142 BICC1Q9H694 974 aaKnown RBP23.97■■□□□ 1.43
SYNGAP1-227ENST00000638142 KRT85P78386 507 aa23.96■■□□□ 1.43
SYNGAP1-227ENST00000638142 LARP1BQ659C4 914 aaKnown RBP23.96■■□□□ 1.43
SYNGAP1-227ENST00000638142 NECAB1Q8N987 351 aa23.96■■□□□ 1.43
SYNGAP1-227ENST00000638142 ALDH8A1Q9H2A2 487 aaPredicted RBP23.96■■□□□ 1.43
SYNGAP1-227ENST00000638142 DDX21Q9NR30 783 aaKnown RBP eCLIP23.96■■□□□ 1.43
SYNGAP1-227ENST00000638142 ELP1O95163 1332 aa23.96■■□□□ 1.43
SYNGAP1-227ENST00000638142 DNTTIP2Q5QJE6 756 aaKnown RBP23.95■■□□□ 1.43
SYNGAP1-227ENST00000638142 PRIMPOLQ96LW4 560 aa23.95■■□□□ 1.43
SYNGAP1-227ENST00000638142 SIPA1L3O60292 1781 aaPredicted RBP23.95■■□□□ 1.42
SYNGAP1-227ENST00000638142 CCDC192P0DO97 292 aa23.95■■□□□ 1.42
SYNGAP1-227ENST00000638142 ESCO1Q5FWF5 840 aa23.95■■□□□ 1.42
SYNGAP1-227ENST00000638142 ARHGEF25Q86VW2 580 aa23.95■■□□□ 1.42
SYNGAP1-227ENST00000638142 ZNF830Q96NB3 372 aaPredicted RBP23.95■■□□□ 1.42
SYNGAP1-227ENST00000638142 TTC12Q9H892 705 aaPredicted RBP23.95■■□□□ 1.42
SYNGAP1-227ENST00000638142 MED23Q9ULK4 1368 aa23.95■■□□□ 1.42
SYNGAP1-227ENST00000638142 BLOC1S2Q6QNY1 142 aa23.94■■□□□ 1.42
SYNGAP1-227ENST00000638142 MYRIPQ8NFW9 859 aa23.94■■□□□ 1.42
SYNGAP1-227ENST00000638142 CCDC8Q9H0W5 538 aaPredicted RBP23.94■■□□□ 1.42
SYNGAP1-227ENST00000638142 FSD1Q9BTV5 496 aa23.94■■□□□ 1.42
SYNGAP1-227ENST00000638142 SPTLC3Q9NUV7 552 aa23.94■■□□□ 1.42
SYNGAP1-227ENST00000638142 NPHP4O75161 1426 aaPredicted RBP23.94■■□□□ 1.42
SYNGAP1-227ENST00000638142 SLIT3O75094 1523 aa23.93■■□□□ 1.42
SYNGAP1-227ENST00000638142 PRAMEF22A3QJZ6 481 aa23.93■■□□□ 1.42
SYNGAP1-227ENST00000638142 TPM3P06753 285 aa23.93■■□□□ 1.42
SYNGAP1-227ENST00000638142 HMGN5P82970 282 aaKnown RBP23.93■■□□□ 1.42
SYNGAP1-227ENST00000638142 DDX54Q8TDD1 881 aaKnown RBP23.93■■□□□ 1.42
SYNGAP1-227ENST00000638142 HMG20BQ9P0W2 317 aa23.93■■□□□ 1.42
SYNGAP1-227ENST00000638142 JCADQ9P266 1359 aa23.93■■□□□ 1.42
SYNGAP1-227ENST00000638142 CAMTA1Q9Y6Y1 1673 aa23.93■■□□□ 1.42
SYNGAP1-227ENST00000638142 MRC1P22897 1456 aa23.93■■□□□ 1.42
SYNGAP1-227ENST00000638142 A0A0D9SFI3 127 aa23.93■■□□□ 1.42
SYNGAP1-227ENST00000638142 GCP02774 474 aa23.93■■□□□ 1.42
SYNGAP1-227ENST00000638142 MPNDQ8N594 471 aa23.93■■□□□ 1.42
SYNGAP1-227ENST00000638142 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.93■■□□□ 1.42
SYNGAP1-227ENST00000638142 RPS6KB1P23443 525 aa23.92■■□□□ 1.42
SYNGAP1-227ENST00000638142 TTC6Q86TZ1 520 aa23.92■■□□□ 1.42
SYNGAP1-227ENST00000638142 ADAMTS7Q9UKP4 1686 aa23.92■■□□□ 1.42
SYNGAP1-227ENST00000638142 TSGA10IPQ3SY00 556 aa23.92■■□□□ 1.42
SYNGAP1-227ENST00000638142 CDC37L1Q7L3B6 337 aa23.92■■□□□ 1.42
SYNGAP1-227ENST00000638142 ANKRD24Q8TF21 1146 aa23.91■■□□□ 1.42
SYNGAP1-227ENST00000638142 BOLA2Q9H3K6 86 aa23.91■■□□□ 1.42
SYNGAP1-227ENST00000638142 TLR7Q9NYK1 1049 aaKnown RBP23.91■■□□□ 1.42
SYNGAP1-227ENST00000638142 DTNBO60941 627 aa23.9■■□□□ 1.42
SYNGAP1-227ENST00000638142 PDIA6Q15084 440 aa23.9■■□□□ 1.42
SYNGAP1-227ENST00000638142 LARP1Q6PKG0 1096 aaKnown RBP23.9■■□□□ 1.42
SYNGAP1-227ENST00000638142 MAP3K11Q16584 847 aa23.9■■□□□ 1.42
SYNGAP1-227ENST00000638142 SCAND2PQ9GZW5 306 aaPredicted RBP23.9■■□□□ 1.42
SYNGAP1-227ENST00000638142 NUP62CLQ9H1M0 184 aa23.9■■□□□ 1.42
SYNGAP1-227ENST00000638142 IGKV5-2P06315 115 aa23.89■■□□□ 1.42
SYNGAP1-227ENST00000638142 AIMP1Q12904 312 aaKnown RBP23.89■■□□□ 1.42
SYNGAP1-227ENST00000638142 PLCB2Q00722 1185 aa23.89■■□□□ 1.41
SYNGAP1-227ENST00000638142 RIC3Q7Z5B4 369 aa23.89■■□□□ 1.41
SYNGAP1-227ENST00000638142 FAM200AQ8TCP9 573 aa23.89■■□□□ 1.41
SYNGAP1-227ENST00000638142 GOLGA6L6A8MZA4 724 aa23.88■■□□□ 1.41
SYNGAP1-227ENST00000638142 NEXNQ0ZGT2 675 aa23.88■■□□□ 1.41
SYNGAP1-227ENST00000638142 TOB2Q14106 344 aaPredicted RBP23.88■■□□□ 1.41
SYNGAP1-227ENST00000638142 SIL1Q9H173 461 aa23.88■■□□□ 1.41
SYNGAP1-227ENST00000638142 AP5Z1O43299 807 aa23.88■■□□□ 1.41
SYNGAP1-227ENST00000638142 FERMT3Q86UX7 667 aa23.88■■□□□ 1.41
SYNGAP1-227ENST00000638142 GTF2F1P35269 517 aaKnown RBP eCLIP23.87■■□□□ 1.412e-6■■■■■ 29.6
SYNGAP1-227ENST00000638142 KRT32Q14532 448 aa23.87■■□□□ 1.41
SYNGAP1-227ENST00000638142 COL9A3Q14050 684 aaPredicted RBP23.87■■□□□ 1.41
SYNGAP1-227ENST00000638142 NPHP3Q7Z494 1330 aa23.86■■□□□ 1.41
SYNGAP1-227ENST00000638142 NEURL1BA8MQ27 555 aa23.86■■□□□ 1.41
SYNGAP1-227ENST00000638142 USPL1Q5W0Q7 1092 aa23.86■■□□□ 1.41
SYNGAP1-227ENST00000638142 ANKLE2Q86XL3 938 aa23.86■■□□□ 1.41
SYNGAP1-227ENST00000638142 LIG1P18858 919 aa23.86■■□□□ 1.41
SYNGAP1-227ENST00000638142 ZNF589Q86UQ0 364 aaPredicted RBP23.86■■□□□ 1.41
SYNGAP1-227ENST00000638142 TAF5LO75529 589 aa23.85■■□□□ 1.41
SYNGAP1-227ENST00000638142 TYRO3Q06418 890 aa23.85■■□□□ 1.41
SYNGAP1-227ENST00000638142 GCKRQ14397 625 aa23.85■■□□□ 1.41
SYNGAP1-227ENST00000638142 KIAA1524Q8TCG1 905 aa23.85■■□□□ 1.41
SYNGAP1-227ENST00000638142 RBM33Q96EV2 1170 aaKnown RBP23.85■■□□□ 1.41
SYNGAP1-227ENST00000638142 TCEANC2Q96MN5 208 aa23.85■■□□□ 1.41
SYNGAP1-227ENST00000638142 DDX19AQ9NUU7 478 aaKnown RBP23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms