RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 VSIG10Q8N0Z9 540 aa18.99■□□□□ 0.63
CLN3-251ENST00000636853 CCDC191Q8NCU4 936 aa18.99■□□□□ 0.63
CLN3-251ENST00000636853 PLCH1Q4KWH8 1693 aa18.99■□□□□ 0.63
CLN3-251ENST00000636853 TEX13AQ9BXU3 409 aaPredicted RBP18.99■□□□□ 0.63
CLN3-251ENST00000636853 BOLA2Q9H3K6 86 aa18.99■□□□□ 0.63
CLN3-251ENST00000636853 DIAPH3Q9NSV4 1193 aa18.99■□□□□ 0.63
CLN3-251ENST00000636853 BCL9O00512 1426 aa18.98■□□□□ 0.63
CLN3-251ENST00000636853 NUTM2BA6NNL0 878 aaPredicted RBP18.98■□□□□ 0.63
CLN3-251ENST00000636853 NUTM2EB1AL46 878 aaPredicted RBP18.98■□□□□ 0.63
CLN3-251ENST00000636853 ANAPC15P60006 121 aa18.98■□□□□ 0.63
CLN3-251ENST00000636853 NUTM2AQ8IVF1 878 aaPredicted RBP18.98■□□□□ 0.63
CLN3-251ENST00000636853 TNPO1Q92973 898 aaKnown RBP18.98■□□□□ 0.63
CLN3-251ENST00000636853 EVI5LQ96CN4 794 aa18.98■□□□□ 0.63
CLN3-251ENST00000636853 ARXQ96QS3 562 aa18.98■□□□□ 0.63
CLN3-251ENST00000636853 STARD3NLO95772 234 aa18.98■□□□□ 0.63
CLN3-251ENST00000636853 SLC4A9Q96Q91 983 aa18.98■□□□□ 0.63
CLN3-251ENST00000636853 HSPA4P34932 840 aa18.97■□□□□ 0.63
CLN3-251ENST00000636853 PIP4K2BP78356 416 aa18.97■□□□□ 0.63
CLN3-251ENST00000636853 RAB3GAP1Q15042 981 aa18.97■□□□□ 0.63
CLN3-251ENST00000636853 LSG1Q9H089 658 aaKnown RBP18.97■□□□□ 0.63
CLN3-251ENST00000636853 RAD50Q92878 1312 aa18.97■□□□□ 0.63
CLN3-251ENST00000636853 WNK3Q9BYP7 1800 aa18.97■□□□□ 0.63
CLN3-251ENST00000636853 TNNI3KQ59H18 835 aa18.97■□□□□ 0.63
CLN3-251ENST00000636853 FPGT-TNNI3KV9GXZ4 949 aa18.97■□□□□ 0.63
CLN3-251ENST00000636853 PRIM1P49642 420 aaKnown RBP18.96■□□□□ 0.63
CLN3-251ENST00000636853 TCIRG1Q13488 830 aa18.96■□□□□ 0.63
CLN3-251ENST00000636853 ISCA1Q9BUE6 129 aa18.96■□□□□ 0.63
CLN3-251ENST00000636853 EPB41L2O43491 1005 aaKnown RBP18.95■□□□□ 0.62
CLN3-251ENST00000636853 KIF6Q6ZMV9 814 aa18.95■□□□□ 0.62
CLN3-251ENST00000636853 KIAA1211Q6ZU35 1233 aa18.95■□□□□ 0.62
CLN3-251ENST00000636853 UPF3BQ9BZI7 483 aaKnown RBP18.95■□□□□ 0.62
CLN3-251ENST00000636853 DBNLQ9UJU6 430 aaKnown RBP18.95■□□□□ 0.62
CLN3-251ENST00000636853 SPATA31A1Q5TZJ5 1347 aa18.95■□□□□ 0.62
CLN3-251ENST00000636853 ZGPATQ8N5A5 531 aaKnown RBP18.94■□□□□ 0.62
CLN3-251ENST00000636853 RUFY2Q8WXA3 655 aa18.94■□□□□ 0.62
CLN3-251ENST00000636853 LRP6O75581 1613 aa18.94■□□□□ 0.62
CLN3-251ENST00000636853 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.94■□□□□ 0.62
CLN3-251ENST00000636853 IL17RAQ96F46 866 aa18.94■□□□□ 0.62
CLN3-251ENST00000636853 A0A0G2JS52 829 aa18.93■□□□□ 0.62
CLN3-251ENST00000636853 CYP19A1P11511 503 aaPredicted RBP18.93■□□□□ 0.62
CLN3-251ENST00000636853 SSFA2P28290 1259 aa18.93■□□□□ 0.62
CLN3-251ENST00000636853 NOL8Q76FK4 1167 aaKnown RBP18.93■□□□□ 0.62
CLN3-251ENST00000636853 ZNF594Q96JF6 807 aaPredicted RBP18.93■□□□□ 0.62
CLN3-251ENST00000636853 NRAPQ86VF7 1730 aa18.93■□□□□ 0.62
CLN3-251ENST00000636853 PTH1RQ03431 593 aa18.93■□□□□ 0.62
CLN3-251ENST00000636853 EDC3Q96F86 508 aaKnown RBP18.93■□□□□ 0.62
CLN3-251ENST00000636853 TMX3Q96JJ7 454 aa18.93■□□□□ 0.62
CLN3-251ENST00000636853 FAM227BQ96M60 508 aa18.93■□□□□ 0.62
CLN3-251ENST00000636853 DBNDD2Q9BQY9 259 aa18.93■□□□□ 0.62
CLN3-251ENST00000636853 DDB1Q16531 1140 aa18.92■□□□□ 0.62
CLN3-251ENST00000636853 ATG9AQ7Z3C6 839 aa18.92■□□□□ 0.62
CLN3-251ENST00000636853 FSD1Q9BTV5 496 aa18.92■□□□□ 0.62
CLN3-251ENST00000636853 SNX14Q9Y5W7 946 aa18.92■□□□□ 0.62
CLN3-251ENST00000636853 DOT1LQ8TEK3 1739 aa18.92■□□□□ 0.62
CLN3-251ENST00000636853 NMIQ13287 307 aaPredicted RBP18.91■□□□□ 0.62
CLN3-251ENST00000636853 HLFQ16534 295 aa18.91■□□□□ 0.62
CLN3-251ENST00000636853 RASEFQ8IZ41 740 aa18.91■□□□□ 0.62
CLN3-251ENST00000636853 ZBTB1Q9Y2K1 713 aa18.91■□□□□ 0.62
CLN3-251ENST00000636853 CCDC9Q9Y3X0 531 aaKnown RBP18.91■□□□□ 0.62
CLN3-251ENST00000636853 MAP3K15Q6ZN16 1313 aa18.91■□□□□ 0.62
CLN3-251ENST00000636853 FAM89AQ96GI7 184 aa18.91■□□□□ 0.62
CLN3-251ENST00000636853 NDUFB9Q9Y6M9 179 aa18.91■□□□□ 0.62
CLN3-251ENST00000636853 ATP5JP18859 108 aa18.9■□□□□ 0.62
CLN3-251ENST00000636853 LRRC24Q50LG9 513 aa18.9■□□□□ 0.62
CLN3-251ENST00000636853 ACSBG1Q96GR2 724 aa18.9■□□□□ 0.62
CLN3-251ENST00000636853 CDCA7Q9BWT1 371 aaPredicted RBP18.9■□□□□ 0.62
CLN3-251ENST00000636853 GPTP24298 496 aa18.9■□□□□ 0.62
CLN3-251ENST00000636853 MCM2P49736 904 aa18.9■□□□□ 0.62
CLN3-251ENST00000636853 TRIM28Q13263 835 aaKnown RBP18.9■□□□□ 0.62
CLN3-251ENST00000636853 THRAP3Q9Y2W1 955 aaKnown RBP18.9■□□□□ 0.62
CLN3-251ENST00000636853 PKP1Q13835 747 aa18.89■□□□□ 0.61
CLN3-251ENST00000636853 GIGYF2Q6Y7W6 1299 aaKnown RBP18.89■□□□□ 0.61
CLN3-251ENST00000636853 GBP4Q96PP9 640 aa18.89■□□□□ 0.61
CLN3-251ENST00000636853 CCDC85AQ96PX6 553 aaPredicted RBP18.89■□□□□ 0.61
CLN3-251ENST00000636853 A0A0D9SFI3 127 aa18.89■□□□□ 0.61
CLN3-251ENST00000636853 DDX11L8A8MPP1 907 aa18.89■□□□□ 0.61
CLN3-251ENST00000636853 HIP1O00291 1037 aa18.89■□□□□ 0.61
CLN3-251ENST00000636853 TRAK2O60296 914 aa18.88■□□□□ 0.61
CLN3-251ENST00000636853 TOM1O60784 492 aa18.88■□□□□ 0.61
CLN3-251ENST00000636853 SYNE4Q8N205 404 aa18.88■□□□□ 0.61
CLN3-251ENST00000636853 NEUROD6Q96NK8 337 aa18.88■□□□□ 0.61
CLN3-251ENST00000636853 PUS3Q9BZE2 481 aaKnown RBP18.88■□□□□ 0.61
CLN3-251ENST00000636853 CWC22Q9HCG8 908 aaKnown RBP18.88■□□□□ 0.61
CLN3-251ENST00000636853 EYA2O00167 538 aa18.88■□□□□ 0.61
CLN3-251ENST00000636853 PCCAP05165 728 aaPredicted RBP18.88■□□□□ 0.61
CLN3-251ENST00000636853 IL15P40933 162 aaPredicted RBP18.88■□□□□ 0.61
CLN3-251ENST00000636853 TIMM10P62072 90 aa18.88■□□□□ 0.61
CLN3-251ENST00000636853 MARCH10Q8NA82 808 aaPredicted RBP18.88■□□□□ 0.61
CLN3-251ENST00000636853 DNAJC2Q99543 621 aaKnown RBP18.88■□□□□ 0.61
CLN3-251ENST00000636853 SPATA31A5Q5VU36 1347 aa18.88■□□□□ 0.61
CLN3-251ENST00000636853 SPATA31A7Q8IWB4 1347 aa18.88■□□□□ 0.61
CLN3-251ENST00000636853 PRPF40BQ6NWY9 871 aaKnown RBP18.87■□□□□ 0.61
CLN3-251ENST00000636853 ZBTB38Q8NAP3 1195 aaPredicted RBP18.87■□□□□ 0.61
CLN3-251ENST00000636853 CCDC171Q6TFL3 1326 aa18.87■□□□□ 0.61
CLN3-251ENST00000636853 CCDC57Q2TAC2 916 aa18.86■□□□□ 0.61
CLN3-251ENST00000636853 NUCB2P80303 420 aa18.86■□□□□ 0.61
CLN3-251ENST00000636853 NLRP10Q86W26 655 aa18.86■□□□□ 0.61
CLN3-251ENST00000636853 TBC1D2BQ9UPU7 963 aa18.86■□□□□ 0.61
CLN3-251ENST00000636853 GZF1Q9H116 711 aaPredicted RBP18.85■□□□□ 0.61
CLN3-251ENST00000636853 CYP2E1P05181 493 aaPredicted RBP18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms