RNA–Protein interactions for RNA: ENST00000636238.1

CIITA-214, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-214ENST00000636238 ZC3H15Q8WU90 426 aaKnown RBP9.81□□□□□ -0.84
CIITA-214ENST00000636238 NIP7Q9Y221 180 aaKnown RBP eCLIP9.81□□□□□ -0.84
CIITA-214ENST00000636238 CCDC85CA6NKD9 419 aa9.8□□□□□ -0.84
CIITA-214ENST00000636238 ERVV-1B6SEH8 477 aa9.8□□□□□ -0.84
CIITA-214ENST00000636238 CRAMP1Q96RY5 1269 aa9.8□□□□□ -0.84
CIITA-214ENST00000636238 PGAP2Q9UHJ9 254 aa9.8□□□□□ -0.84
CIITA-214ENST00000636238 VIRMAQ69YN4 1812 aaKnown RBP9.79□□□□□ -0.84
CIITA-214ENST00000636238 SLX4Q8IY92 1834 aa9.79□□□□□ -0.84
CIITA-214ENST00000636238 GTF2E1P29083 439 aaPredicted RBP9.79□□□□□ -0.84
CIITA-214ENST00000636238 SCNN1DP51172 638 aa9.79□□□□□ -0.84
CIITA-214ENST00000636238 TMX4Q9H1E5 349 aaPredicted RBP9.79□□□□□ -0.84
CIITA-214ENST00000636238 ADARB2Q9NS39 739 aaKnown RBP9.79□□□□□ -0.84
CIITA-214ENST00000636238 COL3A1P02461 1466 aaPredicted RBP9.79□□□□□ -0.84
CIITA-214ENST00000636238 NOGQ13253 232 aa9.78□□□□□ -0.84
CIITA-214ENST00000636238 CST9Q5W186 159 aa9.78□□□□□ -0.84
CIITA-214ENST00000636238 SAPCD2Q86UD0 394 aa9.78□□□□□ -0.84
CIITA-214ENST00000636238 NIM1KQ8IY84 436 aa9.78□□□□□ -0.84
CIITA-214ENST00000636238 LARGE2Q8N3Y3 721 aa9.78□□□□□ -0.84
CIITA-214ENST00000636238 SUPT20HQ8NEM7 779 aa9.78□□□□□ -0.84
CIITA-214ENST00000636238 RTF1Q92541 710 aaKnown RBP9.78□□□□□ -0.84
CIITA-214ENST00000636238 USP16Q9Y5T5 823 aa9.78□□□□□ -0.84
CIITA-214ENST00000636238 BCORQ6W2J9 1755 aa9.78□□□□□ -0.84
CIITA-214ENST00000636238 CYP4F22Q6NT55 531 aa9.77□□□□□ -0.85
CIITA-214ENST00000636238 PAXIP1Q6ZW49 1069 aaPredicted RBP9.77□□□□□ -0.85
CIITA-214ENST00000636238 PNISRQ8TF01 805 aaKnown RBP9.77□□□□□ -0.85
CIITA-214ENST00000636238 RPGRQ92834 1020 aaKnown RBP9.77□□□□□ -0.85
CIITA-214ENST00000636238 RBM17Q96I25 401 aaKnown RBP9.77□□□□□ -0.85
CIITA-214ENST00000636238 CFAP53Q96M91 514 aa9.77□□□□□ -0.85
CIITA-214ENST00000636238 MCOLN1Q9GZU1 580 aa9.77□□□□□ -0.85
CIITA-214ENST00000636238 SAGE1Q9NXZ1 904 aa9.77□□□□□ -0.85
CIITA-214ENST00000636238 GPRC5DQ9NZD1 345 aa9.77□□□□□ -0.85
CIITA-214ENST00000636238 NUDCQ9Y266 331 aa9.77□□□□□ -0.85
CIITA-214ENST00000636238 GJA3Q9Y6H8 435 aa9.77□□□□□ -0.85
CIITA-214ENST00000636238 NBPF26B4DH59 902 aa9.76□□□□□ -0.85
CIITA-214ENST00000636238 U2SURPO15042 1029 aaKnown RBP9.76□□□□□ -0.85
CIITA-214ENST00000636238 EPS15P42566 896 aa9.76□□□□□ -0.85
CIITA-214ENST00000636238 RALBP1Q15311 655 aa9.76□□□□□ -0.85
CIITA-214ENST00000636238 NBPF10Q6P3W6 841 aaKnown RBP9.76□□□□□ -0.85
CIITA-214ENST00000636238 NBPF15Q8N660 670 aa9.76□□□□□ -0.85
CIITA-214ENST00000636238 RTFDC1Q9BY42 306 aaPredicted RBP9.76□□□□□ -0.85
CIITA-214ENST00000636238 CCDC88AQ3V6T2 1871 aa9.76□□□□□ -0.85
CIITA-214ENST00000636238 ERBB4Q15303 1308 aa9.76□□□□□ -0.85
CIITA-214ENST00000636238 PPEF1O14829 653 aaPredicted RBP9.75□□□□□ -0.85
CIITA-214ENST00000636238 TNIP1Q15025 636 aa9.75□□□□□ -0.85
CIITA-214ENST00000636238 PARP10Q53GL7 1025 aa9.75□□□□□ -0.85
CIITA-214ENST00000636238 CDC37L1Q7L3B6 337 aa9.75□□□□□ -0.85
CIITA-214ENST00000636238 REM2Q8IYK8 340 aaPredicted RBP9.75□□□□□ -0.85
CIITA-214ENST00000636238 RSPH6AQ9H0K4 717 aa9.75□□□□□ -0.85
CIITA-214ENST00000636238 MRS2Q9HD23 443 aa9.75□□□□□ -0.85
CIITA-214ENST00000636238 ZNRF3Q9ULT6 936 aa9.75□□□□□ -0.85
CIITA-214ENST00000636238 MAP3K15Q6ZN16 1313 aa9.75□□□□□ -0.85
CIITA-214ENST00000636238 SIPA1L3O60292 1781 aaPredicted RBP9.74□□□□□ -0.85
CIITA-214ENST00000636238 PPIP5K2O43314 1243 aa9.74□□□□□ -0.85
CIITA-214ENST00000636238 KCNQ3O43525 872 aa9.74□□□□□ -0.85
CIITA-214ENST00000636238 CELF2O95319 508 aaKnown RBP9.74□□□□□ -0.85
CIITA-214ENST00000636238 PRKAR2BP31323 418 aa9.74□□□□□ -0.85
CIITA-214ENST00000636238 TAF7Q15545 349 aaPredicted RBP9.74□□□□□ -0.85
CIITA-214ENST00000636238 OLFM4Q6UX06 510 aa9.74□□□□□ -0.85
CIITA-214ENST00000636238 KIF6Q6ZMV9 814 aa9.74□□□□□ -0.85
CIITA-214ENST00000636238 TMC4Q7Z404 712 aa9.74□□□□□ -0.85
CIITA-214ENST00000636238 ATP6V0A2Q9Y487 856 aa9.74□□□□□ -0.85
CIITA-214ENST00000636238 MYBBP1AQ9BQG0 1328 aaKnown RBP9.74□□□□□ -0.85
CIITA-214ENST00000636238 ABCC12Q96J65 1359 aa9.74□□□□□ -0.85
CIITA-214ENST00000636238 TRAF5O00463 557 aa9.73□□□□□ -0.85
CIITA-214ENST00000636238 BBOX1O75936 387 aa9.73□□□□□ -0.85
CIITA-214ENST00000636238 DGKZQ13574 1117 aa9.73□□□□□ -0.85
CIITA-214ENST00000636238 HLFQ16534 295 aa9.73□□□□□ -0.85
CIITA-214ENST00000636238 SLC10A5Q5PT55 438 aa9.73□□□□□ -0.85
CIITA-214ENST00000636238 PPP1R42Q7Z4L9 355 aa9.73□□□□□ -0.85
CIITA-214ENST00000636238 DPF2Q92785 391 aa9.73□□□□□ -0.85
CIITA-214ENST00000636238 CCDC102AQ96A19 550 aa9.73□□□□□ -0.85
CIITA-214ENST00000636238 LTBP1Q14766 1721 aa9.73□□□□□ -0.85
CIITA-214ENST00000636238 AOC2O75106 756 aa9.72□□□□□ -0.85
CIITA-214ENST00000636238 CXCL9Q07325 125 aa9.72□□□□□ -0.85
CIITA-214ENST00000636238 KIAA2012Q0VF49 1180 aa9.72□□□□□ -0.85
CIITA-214ENST00000636238 PRPF38BQ5VTL8 546 aaKnown RBP9.72□□□□□ -0.85
CIITA-214ENST00000636238 CIAPIN1Q6FI81 312 aa9.72□□□□□ -0.85
CIITA-214ENST00000636238 ZNF34Q8IZ26 560 aa9.72□□□□□ -0.85
CIITA-214ENST00000636238 FAM9BQ8IZU0 186 aa9.72□□□□□ -0.85
CIITA-214ENST00000636238 PHACTR3Q96KR7 559 aa9.72□□□□□ -0.85
CIITA-214ENST00000636238 NLRP3Q96P20 1036 aa9.72□□□□□ -0.85
CIITA-214ENST00000636238 COL4A5P29400 1685 aa9.71□□□□□ -0.85
CIITA-214ENST00000636238 PRAMEF22A3QJZ6 481 aa9.71□□□□□ -0.86
CIITA-214ENST00000636238 H7C1D1 291 aa9.71□□□□□ -0.86
CIITA-214ENST00000636238 NTSR2O95665 410 aa9.71□□□□□ -0.86
CIITA-214ENST00000636238 RPS12P25398 132 aaKnown RBP9.71□□□□□ -0.86
CIITA-214ENST00000636238 PPP2R1AP30153 589 aa9.71□□□□□ -0.86
CIITA-214ENST00000636238 GMPSP49915 693 aaPredicted RBP9.71□□□□□ -0.86
CIITA-214ENST00000636238 GRM1Q13255 1194 aa9.71□□□□□ -0.86
CIITA-214ENST00000636238 GIGYF2Q6Y7W6 1299 aaKnown RBP9.71□□□□□ -0.86
CIITA-214ENST00000636238 SP8Q8IXZ3 490 aa9.71□□□□□ -0.86
CIITA-214ENST00000636238 FAM177BA6PVY3 158 aa9.7□□□□□ -0.86
CIITA-214ENST00000636238 PIP4K2AP48426 406 aaPredicted RBP9.7□□□□□ -0.86
CIITA-214ENST00000636238 DPP8Q6V1X1 898 aaPredicted RBP9.7□□□□□ -0.86
CIITA-214ENST00000636238 NUTM1Q86Y26 1132 aa9.7□□□□□ -0.86
CIITA-214ENST00000636238 BCL2L13Q9BXK5 485 aa9.7□□□□□ -0.86
CIITA-214ENST00000636238 GLIS2Q9BZE0 524 aaPredicted RBP9.7□□□□□ -0.86
CIITA-214ENST00000636238 PDE4DIPQ5VU43 2346 aa9.7□□□□□ -0.86
CIITA-214ENST00000636238 NEFMP07197 916 aa9.69□□□□□ -0.86
CIITA-214ENST00000636238 HUNKP57058 714 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms