RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 ZBTB3Q9H5J0 574 aa23.35■■□□□ 1.33
CLN3-243ENST00000635973 SPINK5Q9NQ38 1064 aaPredicted RBP23.35■■□□□ 1.33
CLN3-243ENST00000635973 TTLL7Q6ZT98 887 aa23.34■■□□□ 1.33
CLN3-243ENST00000635973 LTBP3Q9NS15 1303 aa23.33■■□□□ 1.33
CLN3-243ENST00000635973 ALDH1B1P30837 517 aa23.33■■□□□ 1.33
CLN3-243ENST00000635973 CCDC93Q567U6 631 aa23.33■■□□□ 1.33
CLN3-243ENST00000635973 DNAJC5GQ8N7S2 189 aa23.33■■□□□ 1.33
CLN3-243ENST00000635973 E9PSI1 815 aa23.32■■□□□ 1.32
CLN3-243ENST00000635973 GPTP24298 496 aa23.32■■□□□ 1.32
CLN3-243ENST00000635973 SMC1BQ8NDV3 1235 aa23.32■■□□□ 1.32
CLN3-243ENST00000635973 CHMP4AQ9BY43 222 aa23.32■■□□□ 1.32
CLN3-243ENST00000635973 KLRG2A4D1S0 409 aaPredicted RBP23.31■■□□□ 1.32
CLN3-243ENST00000635973 TWISTNBQ3B726 338 aaPredicted RBP23.31■■□□□ 1.32
CLN3-243ENST00000635973 TSPYL6Q8N831 410 aa23.31■■□□□ 1.32
CLN3-243ENST00000635973 CHPF2Q9P2E5 772 aa23.31■■□□□ 1.32
CLN3-243ENST00000635973 ANXA1P04083 346 aa23.3■■□□□ 1.32
CLN3-243ENST00000635973 EXOSC9Q06265 439 aaKnown RBP23.3■■□□□ 1.32
CLN3-243ENST00000635973 NUTM1Q86Y26 1132 aa23.3■■□□□ 1.32
CLN3-243ENST00000635973 WDR90Q96KV7 1748 aa23.3■■□□□ 1.32
CLN3-243ENST00000635973 PROSER3Q2NL68 480 aa23.29■■□□□ 1.32
CLN3-243ENST00000635973 RPGRQ92834 1020 aaKnown RBP23.29■■□□□ 1.32
CLN3-243ENST00000635973 DDX21Q9NR30 783 aaKnown RBP eCLIP23.29■■□□□ 1.32
CLN3-243ENST00000635973 DBF4Q9UBU7 674 aaPredicted RBP23.29■■□□□ 1.32
CLN3-243ENST00000635973 HTRA3P83110 453 aa23.28■■□□□ 1.32
CLN3-243ENST00000635973 CCDC30Q5VVM6 783 aa23.28■■□□□ 1.32
CLN3-243ENST00000635973 GIGYF2Q6Y7W6 1299 aaKnown RBP23.28■■□□□ 1.32
CLN3-243ENST00000635973 PPP1R42Q7Z4L9 355 aa23.28■■□□□ 1.32
CLN3-243ENST00000635973 RTKN2Q8IZC4 609 aa23.28■■□□□ 1.32
CLN3-243ENST00000635973 PDIA6Q15084 440 aa23.27■■□□□ 1.32
CLN3-243ENST00000635973 CDCA7LQ96GN5 454 aa23.27■■□□□ 1.32
CLN3-243ENST00000635973 SLFN5Q08AF3 891 aa23.26■■□□□ 1.31
CLN3-243ENST00000635973 PARP10Q53GL7 1025 aa23.26■■□□□ 1.31
CLN3-243ENST00000635973 SUSD4Q5VX71 490 aa23.26■■□□□ 1.31
CLN3-243ENST00000635973 C7orf43Q8WVR3 580 aa23.26■■□□□ 1.31
CLN3-243ENST00000635973 STK31Q9BXU1 1019 aa23.26■■□□□ 1.31
CLN3-243ENST00000635973 IBTKQ9P2D0 1353 aaPredicted RBP23.26■■□□□ 1.31
CLN3-243ENST00000635973 FKBP4Q02790 459 aaKnown RBP eCLIP23.25■■□□□ 1.31
CLN3-243ENST00000635973 AIMP1Q12904 312 aaKnown RBP23.25■■□□□ 1.31
CLN3-243ENST00000635973 ZNF34Q8IZ26 560 aa23.25■■□□□ 1.31
CLN3-243ENST00000635973 HYPKQ9NX55 129 aa23.25■■□□□ 1.31
CLN3-243ENST00000635973 UBN2Q6ZU65 1347 aa23.25■■□□□ 1.31
CLN3-243ENST00000635973 ABCC12Q96J65 1359 aa23.25■■□□□ 1.31
CLN3-243ENST00000635973 XAGE3Q8WTP9 111 aa23.24■■□□□ 1.31
CLN3-243ENST00000635973 CRY2Q49AN0 593 aa23.23■■□□□ 1.31
CLN3-243ENST00000635973 HSP90AB3PQ58FF7 597 aa23.23■■□□□ 1.31
CLN3-243ENST00000635973 COPS6Q7L5N1 327 aa23.23■■□□□ 1.31
CLN3-243ENST00000635973 RBM17Q96I25 401 aaKnown RBP23.23■■□□□ 1.31
CLN3-243ENST00000635973 TCERG1O14776 1098 aaKnown RBP23.22■■□□□ 1.31
CLN3-243ENST00000635973 DDNO94850 711 aaPredicted RBP23.22■■□□□ 1.31
CLN3-243ENST00000635973 LRP10Q7Z4F1 713 aa23.22■■□□□ 1.31
CLN3-243ENST00000635973 KLRG1Q96E93 195 aa23.22■■□□□ 1.31
CLN3-243ENST00000635973 UTP14AQ9BVJ6 771 aaKnown RBP23.22■■□□□ 1.31
CLN3-243ENST00000635973 TMX4Q9H1E5 349 aaPredicted RBP23.22■■□□□ 1.31
CLN3-243ENST00000635973 ZNF277Q9NRM2 450 aaPredicted RBP23.22■■□□□ 1.31
CLN3-243ENST00000635973 ZBED9Q6R2W3 1325 aa23.22■■□□□ 1.31
CLN3-243ENST00000635973 ANKRD36CQ5JPF3 1778 aa23.22■■□□□ 1.31
CLN3-243ENST00000635973 VAMP4O75379 141 aa23.21■■□□□ 1.31
CLN3-243ENST00000635973 NTSR2O95665 410 aa23.21■■□□□ 1.31
CLN3-243ENST00000635973 CC2D2BQ6DHV5 1058 aa23.21■■□□□ 1.31
CLN3-243ENST00000635973 OLFM4Q6UX06 510 aa23.21■■□□□ 1.31
CLN3-243ENST00000635973 NLRP3Q96P20 1036 aa23.21■■□□□ 1.31
CLN3-243ENST00000635973 RIC1Q4ADV7 1423 aa23.2■■□□□ 1.3
CLN3-243ENST00000635973 SYNE4Q8N205 404 aa23.2■■□□□ 1.3
CLN3-243ENST00000635973 IQCA1LA6NCM1 817 aa23.19■■□□□ 1.3
CLN3-243ENST00000635973 POTECB2RU33 542 aa23.19■■□□□ 1.3
CLN3-243ENST00000635973 HOXA10P31260 410 aaPredicted RBP23.19■■□□□ 1.3
CLN3-243ENST00000635973 IARSP41252 1262 aaKnown RBP23.18■■□□□ 1.3
CLN3-243ENST00000635973 GRIPAP1Q4V328 841 aa23.18■■□□□ 1.3
CLN3-243ENST00000635973 JDP2Q8WYK2 163 aa23.17■■□□□ 1.3
CLN3-243ENST00000635973 CRAMP1Q96RY5 1269 aa23.17■■□□□ 1.3
CLN3-243ENST00000635973 SCN4AP35499 1836 aa23.17■■□□□ 1.3
CLN3-243ENST00000635973 RNF123Q5XPI4 1314 aa23.16■■□□□ 1.3
CLN3-243ENST00000635973 PPEF1O14829 653 aaPredicted RBP23.16■■□□□ 1.3
CLN3-243ENST00000635973 DDX58O95786 925 aaKnown RBP23.16■■□□□ 1.3
CLN3-243ENST00000635973 SLC4A2P04920 1241 aa23.16■■□□□ 1.3
CLN3-243ENST00000635973 TRMT2AQ8IZ69 625 aaKnown RBP23.16■■□□□ 1.3
CLN3-243ENST00000635973 JMYQ8N9B5 988 aa23.16■■□□□ 1.3
CLN3-243ENST00000635973 PSMD1Q99460 953 aa23.16■■□□□ 1.3
CLN3-243ENST00000635973 PHAXQ9H814 394 aaKnown RBP23.16■■□□□ 1.3
CLN3-243ENST00000635973 TCIRG1Q13488 830 aa23.15■■□□□ 1.3
CLN3-243ENST00000635973 ANKRD13DQ6ZTN6 518 aa23.15■■□□□ 1.3
CLN3-243ENST00000635973 PLBD2Q8NHP8 589 aa23.15■■□□□ 1.3
CLN3-243ENST00000635973 SLC10A5Q5PT55 438 aa23.14■■□□□ 1.29
CLN3-243ENST00000635973 CHADLQ6NUI6 762 aa23.14■■□□□ 1.29
CLN3-243ENST00000635973 RIC3Q7Z5B4 369 aa23.14■■□□□ 1.29
CLN3-243ENST00000635973 TRMT112Q9UI30 125 aaKnown RBP23.14■■□□□ 1.29
CLN3-243ENST00000635973 NLRP10Q86W26 655 aa23.13■■□□□ 1.29
CLN3-243ENST00000635973 ZNF541Q9H0D2 1346 aa23.12■■□□□ 1.29
CLN3-243ENST00000635973 C3orf67Q6ZVT6 689 aa23.12■■□□□ 1.29
CLN3-243ENST00000635973 L3MBTL3Q96JM7 780 aaPredicted RBP23.12■■□□□ 1.29
CLN3-243ENST00000635973 SH3TC1Q8TE82 1336 aa23.11■■□□□ 1.29
CLN3-243ENST00000635973 CT47B1P0C2W7 299 aaPredicted RBP23.11■■□□□ 1.29
CLN3-243ENST00000635973 EIF6P56537 245 aaKnown RBP23.11■■□□□ 1.29
CLN3-243ENST00000635973 LARGE2Q8N3Y3 721 aa23.11■■□□□ 1.29
CLN3-243ENST00000635973 HACL1Q9UJ83 578 aa23.11■■□□□ 1.29
CLN3-243ENST00000635973 LAMB2P55268 1798 aa23.11■■□□□ 1.29
CLN3-243ENST00000635973 FZD9O00144 591 aa23.1■■□□□ 1.29
CLN3-243ENST00000635973 HCLS1P14317 486 aaPredicted RBP23.1■■□□□ 1.29
CLN3-243ENST00000635973 FLIIQ13045 1269 aa23.1■■□□□ 1.29
CLN3-243ENST00000635973 EAPPQ56P03 285 aaPredicted RBP23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms