RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 GNAI3P08754 354 aa18.59■□□□□ 0.57
LIMS3-206ENST00000631420 SYNE4Q8N205 404 aa18.59■□□□□ 0.57
LIMS3-206ENST00000631420 PCDHB15Q9Y5E8 787 aa18.59■□□□□ 0.57
LIMS3-206ENST00000631420 UTYO14607 1347 aa18.58■□□□□ 0.56
LIMS3-206ENST00000631420 C4AP0C0L4 1744 aa18.58■□□□□ 0.56
LIMS3-206ENST00000631420 UBTFL1P0CB47 393 aaPredicted RBP18.58■□□□□ 0.56
LIMS3-206ENST00000631420 NUP98P52948 1817 aa18.58■□□□□ 0.56
LIMS3-206ENST00000631420 CASP7P55210 303 aa18.58■□□□□ 0.56
LIMS3-206ENST00000631420 NFIXQ14938 502 aa18.58■□□□□ 0.56
LIMS3-206ENST00000631420 ERICH6BQ5W0A0 696 aa18.58■□□□□ 0.56
LIMS3-206ENST00000631420 UBE3BQ7Z3V4 1068 aa18.58■□□□□ 0.56
LIMS3-206ENST00000631420 FAM89AQ96GI7 184 aa18.58■□□□□ 0.56
LIMS3-206ENST00000631420 CHMP4BQ9H444 224 aaKnown RBP18.58■□□□□ 0.56
LIMS3-206ENST00000631420 SUCLG2Q96I99 432 aa18.57■□□□□ 0.56
LIMS3-206ENST00000631420 SETDB2Q96T68 719 aa18.57■□□□□ 0.56
LIMS3-206ENST00000631420 TRMT112Q9UI30 125 aaKnown RBP18.57■□□□□ 0.56
LIMS3-206ENST00000631420 TUBGCP6Q96RT7 1819 aa18.57■□□□□ 0.56
LIMS3-206ENST00000631420 IBTKQ9P2D0 1353 aaPredicted RBP18.56■□□□□ 0.56
LIMS3-206ENST00000631420 GNAI2P04899 355 aa18.56■□□□□ 0.56
LIMS3-206ENST00000631420 TM4SF1P30408 202 aa18.56■□□□□ 0.56
LIMS3-206ENST00000631420 PARP10Q53GL7 1025 aa18.56■□□□□ 0.56
LIMS3-206ENST00000631420 KAZALD1Q96I82 304 aa18.56■□□□□ 0.56
LIMS3-206ENST00000631420 LRRFIP2Q9Y608 721 aaKnown RBP18.56■□□□□ 0.56
LIMS3-206ENST00000631420 BCORQ6W2J9 1755 aa18.56■□□□□ 0.56
LIMS3-206ENST00000631420 PCCAP05165 728 aaPredicted RBP18.55■□□□□ 0.56
LIMS3-206ENST00000631420 MSL1Q68DK7 614 aa18.55■□□□□ 0.56
LIMS3-206ENST00000631420 ZBTB38Q8NAP3 1195 aaPredicted RBP18.55■□□□□ 0.56
LIMS3-206ENST00000631420 UTP14AQ9BVJ6 771 aaKnown RBP18.55■□□□□ 0.56
LIMS3-206ENST00000631420 SCN7AQ01118 1682 aa18.55■□□□□ 0.56
LIMS3-206ENST00000631420 NTSR2O95665 410 aa18.55■□□□□ 0.56
LIMS3-206ENST00000631420 R3HDM1Q15032 1099 aaKnown RBP18.55■□□□□ 0.56
LIMS3-206ENST00000631420 EPHA10Q5JZY3 1008 aa18.55■□□□□ 0.56
LIMS3-206ENST00000631420 AAMPQ13685 434 aa18.54■□□□□ 0.56
LIMS3-206ENST00000631420 PPP1R42Q7Z4L9 355 aa18.54■□□□□ 0.56
LIMS3-206ENST00000631420 NUTM1Q86Y26 1132 aa18.54■□□□□ 0.56
LIMS3-206ENST00000631420 NLGN1Q8N2Q7 840 aa18.54■□□□□ 0.56
LIMS3-206ENST00000631420 N4BP2Q86UW6 1770 aaPredicted RBP18.54■□□□□ 0.56
LIMS3-206ENST00000631420 DDR1Q08345 913 aa18.53■□□□□ 0.56
LIMS3-206ENST00000631420 PPP4R2Q9NY27 417 aa18.53■□□□□ 0.56
LIMS3-206ENST00000631420 SIRT2Q8IXJ6 389 aa18.52■□□□□ 0.56
LIMS3-206ENST00000631420 CCDC24Q8N4L8 307 aa18.52■□□□□ 0.56
LIMS3-206ENST00000631420 IRS4O14654 1257 aaPredicted RBP18.51■□□□□ 0.55
LIMS3-206ENST00000631420 ERFEQ4G0M1 354 aa18.51■□□□□ 0.55
LIMS3-206ENST00000631420 B4GALNT3Q6L9W6 998 aa18.51■□□□□ 0.55
LIMS3-206ENST00000631420 CEP85Q6P2H3 762 aa18.51■□□□□ 0.55
LIMS3-206ENST00000631420 NBPF5PQ86XG9 351 aaPredicted RBP18.51■□□□□ 0.55
LIMS3-206ENST00000631420 BICC1Q9H694 974 aaKnown RBP18.51■□□□□ 0.55
LIMS3-206ENST00000631420 AFDNP55196 1824 aaKnown RBP18.51■□□□□ 0.55
LIMS3-206ENST00000631420 ANKRD36CQ5JPF3 1778 aa18.51■□□□□ 0.55
LIMS3-206ENST00000631420 SH3TC1Q8TE82 1336 aa18.51■□□□□ 0.55
LIMS3-206ENST00000631420 PSDA5PKW4 1024 aaPredicted RBP18.51■□□□□ 0.55
LIMS3-206ENST00000631420 POLRMTO00411 1230 aaKnown RBP18.51■□□□□ 0.55
LIMS3-206ENST00000631420 SERPINB2P05120 415 aa18.51■□□□□ 0.55
LIMS3-206ENST00000631420 HCLS1P14317 486 aaPredicted RBP18.51■□□□□ 0.55
LIMS3-206ENST00000631420 FOXO4P98177 505 aa18.51■□□□□ 0.55
LIMS3-206ENST00000631420 IGHDP01880 384 aa18.5■□□□□ 0.55
LIMS3-206ENST00000631420 TPTE2Q6XPS3 522 aa18.5■□□□□ 0.55
LIMS3-206ENST00000631420 ANKRD44Q8N8A2 993 aa18.5■□□□□ 0.55
LIMS3-206ENST00000631420 CARMIL3Q8ND23 1372 aa18.5■□□□□ 0.55
LIMS3-206ENST00000631420 CDHR2Q9BYE9 1310 aa18.49■□□□□ 0.55
LIMS3-206ENST00000631420 PNMA6EA0A0J9YXQ4 647 aa18.49■□□□□ 0.55
LIMS3-206ENST00000631420 MMP10P09238 476 aa18.49■□□□□ 0.55
LIMS3-206ENST00000631420 GTF2E1P29083 439 aaPredicted RBP18.49■□□□□ 0.55
LIMS3-206ENST00000631420 ATP8B2P98198 1209 aa18.49■□□□□ 0.55
LIMS3-206ENST00000631420 RPAP2Q8IXW5 612 aaPredicted RBP18.49■□□□□ 0.55
LIMS3-206ENST00000631420 NYXQ9GZU5 481 aa18.49■□□□□ 0.55
LIMS3-206ENST00000631420 CCDC136Q96JN2 1154 aa18.48■□□□□ 0.55
LIMS3-206ENST00000631420 PLA2G12BQ9BX93 195 aa18.48■□□□□ 0.55
LIMS3-206ENST00000631420 HDAC5Q9UQL6 1122 aa18.48■□□□□ 0.55
LIMS3-206ENST00000631420 PRR5LQ6MZQ0 368 aa18.47■□□□□ 0.55
LIMS3-206ENST00000631420 LMBR1LQ6UX01 489 aa18.47■□□□□ 0.55
LIMS3-206ENST00000631420 SLC16A10Q8TF71 515 aa18.47■□□□□ 0.55
LIMS3-206ENST00000631420 QSER1Q2KHR3 1735 aa18.47■□□□□ 0.55
LIMS3-206ENST00000631420 ABCC12Q96J65 1359 aa18.47■□□□□ 0.55
LIMS3-206ENST00000631420 PDE8AO60658 829 aa18.47■□□□□ 0.55
LIMS3-206ENST00000631420 ZBTB7AO95365 584 aa18.47■□□□□ 0.55
LIMS3-206ENST00000631420 RABL6Q3YEC7 729 aaPredicted RBP18.47■□□□□ 0.55
LIMS3-206ENST00000631420 SLC10A5Q5PT55 438 aa18.47■□□□□ 0.55
LIMS3-206ENST00000631420 CCDC85AQ96PX6 553 aaPredicted RBP18.47■□□□□ 0.55
LIMS3-206ENST00000631420 NPHP1O15259 732 aa18.46■□□□□ 0.55
LIMS3-206ENST00000631420 C3orf67Q6ZVT6 689 aa18.46■□□□□ 0.55
LIMS3-206ENST00000631420 CNBD1Q8NA66 436 aa18.46■□□□□ 0.55
LIMS3-206ENST00000631420 PARP3Q9Y6F1 533 aa18.46■□□□□ 0.55
LIMS3-206ENST00000631420 SRGAP3O43295 1099 aa18.45■□□□□ 0.54
LIMS3-206ENST00000631420 CSF1RP07333 972 aa18.45■□□□□ 0.54
LIMS3-206ENST00000631420 MTX1Q13505 466 aa18.45■□□□□ 0.54
LIMS3-206ENST00000631420 TTLL11Q8NHH1 800 aa18.45■□□□□ 0.54
LIMS3-206ENST00000631420 ATF5Q9Y2D1 282 aaPredicted RBP18.45■□□□□ 0.54
LIMS3-206ENST00000631420 CTSWP56202 376 aa18.44■□□□□ 0.54
LIMS3-206ENST00000631420 HDAC1Q13547 482 aaPredicted RBP18.44■□□□□ 0.54
LIMS3-206ENST00000631420 RWDD1Q9H446 243 aaPredicted RBP18.44■□□□□ 0.54
LIMS3-206ENST00000631420 CHMP3Q9Y3E7 222 aa18.44■□□□□ 0.54
LIMS3-206ENST00000631420 COL24A1Q17RW2 1714 aa18.44■□□□□ 0.54
LIMS3-206ENST00000631420 POLA2Q14181 598 aa18.43■□□□□ 0.54
LIMS3-206ENST00000631420 SSH3Q8TE77 659 aa18.43■□□□□ 0.54
LIMS3-206ENST00000631420 RFX5P48382 616 aaPredicted RBP18.42■□□□□ 0.54
LIMS3-206ENST00000631420 ST5P78524 1137 aa18.42■□□□□ 0.54
LIMS3-206ENST00000631420 KLHDC4Q8TBB5 520 aa18.42■□□□□ 0.54
LIMS3-206ENST00000631420 MTFR1LQ9H019 292 aa18.42■□□□□ 0.54
LIMS3-206ENST00000631420 GREM2Q9H772 168 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms