RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 GPATCH3Q96I76 525 aa23.93■■□□□ 1.42
CHRNA4-209ENST00000627000 CCDC191Q8NCU4 936 aa23.92■■□□□ 1.42
CHRNA4-209ENST00000627000 PALD1Q9ULE6 856 aa23.92■■□□□ 1.42
CHRNA4-209ENST00000627000 STARD3NLO95772 234 aa23.92■■□□□ 1.42
CHRNA4-209ENST00000627000 CHMP3Q9Y3E7 222 aa23.91■■□□□ 1.42
CHRNA4-209ENST00000627000 TOM1O60784 492 aa23.91■■□□□ 1.42
CHRNA4-209ENST00000627000 SGSM2O43147 1006 aa23.9■■□□□ 1.42
CHRNA4-209ENST00000627000 HSP90AA1P07900 732 aaKnown RBP23.9■■□□□ 1.42
CHRNA4-209ENST00000627000 TFCP2Q12800 502 aa23.9■■□□□ 1.42
CHRNA4-209ENST00000627000 ISCA1Q9BUE6 129 aa23.9■■□□□ 1.42
CHRNA4-209ENST00000627000 DDB1Q16531 1140 aa23.89■■□□□ 1.42
CHRNA4-209ENST00000627000 ARXQ96QS3 562 aa23.89■■□□□ 1.42
CHRNA4-209ENST00000627000 CYP19A1P11511 503 aaPredicted RBP23.89■■□□□ 1.41
CHRNA4-209ENST00000627000 TCIRG1Q13488 830 aa23.89■■□□□ 1.41
CHRNA4-209ENST00000627000 CWC27Q6UX04 472 aaKnown RBP23.89■■□□□ 1.41
CHRNA4-209ENST00000627000 THRAP3Q9Y2W1 955 aaKnown RBP23.88■■□□□ 1.41
CHRNA4-209ENST00000627000 KIF6Q6ZMV9 814 aa23.88■■□□□ 1.41
CHRNA4-209ENST00000627000 CDCA7Q9BWT1 371 aaPredicted RBP23.88■■□□□ 1.41
CHRNA4-209ENST00000627000 MCCP23508 829 aa23.87■■□□□ 1.41
CHRNA4-209ENST00000627000 CCDC9Q9Y3X0 531 aaKnown RBP23.87■■□□□ 1.41
CHRNA4-209ENST00000627000 SPATA31A5Q5VU36 1347 aa23.87■■□□□ 1.41
CHRNA4-209ENST00000627000 SPATA31A7Q8IWB4 1347 aa23.87■■□□□ 1.41
CHRNA4-209ENST00000627000 A0A0G2JS52 829 aa23.86■■□□□ 1.41
CHRNA4-209ENST00000627000 TNNI3KQ59H18 835 aa23.86■■□□□ 1.41
CHRNA4-209ENST00000627000 BOLA2Q9H3K6 86 aa23.86■■□□□ 1.41
CHRNA4-209ENST00000627000 ZBTB1Q9Y2K1 713 aa23.86■■□□□ 1.41
CHRNA4-209ENST00000627000 FPGT-TNNI3KV9GXZ4 949 aa23.86■■□□□ 1.41
CHRNA4-209ENST00000627000 ST18O60284 1047 aa23.86■■□□□ 1.41
CHRNA4-209ENST00000627000 EVI5LQ96CN4 794 aa23.86■■□□□ 1.41
CHRNA4-209ENST00000627000 ACSBG1Q96GR2 724 aa23.86■■□□□ 1.41
CHRNA4-209ENST00000627000 MARCH10Q8NA82 808 aaPredicted RBP23.85■■□□□ 1.41
CHRNA4-209ENST00000627000 DIAPH3Q9NSV4 1193 aa23.85■■□□□ 1.41
CHRNA4-209ENST00000627000 DBNLQ9UJU6 430 aaKnown RBP23.85■■□□□ 1.41
CHRNA4-209ENST00000627000 SLIT2O94813 1529 aa23.85■■□□□ 1.41
CHRNA4-209ENST00000627000 HLFQ16534 295 aa23.85■■□□□ 1.41
CHRNA4-209ENST00000627000 MAP3K15Q6ZN16 1313 aa23.84■■□□□ 1.41
CHRNA4-209ENST00000627000 NEK4P51957 841 aa23.84■■□□□ 1.41
CHRNA4-209ENST00000627000 LSG1Q9H089 658 aaKnown RBP23.84■■□□□ 1.41
CHRNA4-209ENST00000627000 NWD2Q9ULI1 1742 aa23.84■■□□□ 1.41
CHRNA4-209ENST00000627000 ZNF594Q96JF6 807 aaPredicted RBP23.84■■□□□ 1.41
CHRNA4-209ENST00000627000 RAD50Q92878 1312 aa23.83■■□□□ 1.41
CHRNA4-209ENST00000627000 HSPA4P34932 840 aa23.83■■□□□ 1.41
CHRNA4-209ENST00000627000 ANAPC15P60006 121 aa23.83■■□□□ 1.41
CHRNA4-209ENST00000627000 ATG9AQ7Z3C6 839 aa23.83■■□□□ 1.41
CHRNA4-209ENST00000627000 TRIM28Q13263 835 aaKnown RBP23.82■■□□□ 1.4
CHRNA4-209ENST00000627000 FAM89AQ96GI7 184 aa23.82■■□□□ 1.4
CHRNA4-209ENST00000627000 UBAP1LF5GYI3 381 aa23.82■■□□□ 1.4
CHRNA4-209ENST00000627000 GIGYF2Q6Y7W6 1299 aaKnown RBP23.82■■□□□ 1.4
CHRNA4-209ENST00000627000 CIZ1Q9ULV3 898 aaPredicted RBP23.82■■□□□ 1.4
CHRNA4-209ENST00000627000 EPB41L2O43491 1005 aaKnown RBP23.81■■□□□ 1.4
CHRNA4-209ENST00000627000 DBNDD2Q9BQY9 259 aa23.81■■□□□ 1.4
CHRNA4-209ENST00000627000 GPTP24298 496 aa23.81■■□□□ 1.4
CHRNA4-209ENST00000627000 EDC3Q96F86 508 aaKnown RBP23.81■■□□□ 1.4
CHRNA4-209ENST00000627000 LRRC24Q50LG9 513 aa23.8■■□□□ 1.4
CHRNA4-209ENST00000627000 SYNE4Q8N205 404 aa23.8■■□□□ 1.4
CHRNA4-209ENST00000627000 IL17RAQ96F46 866 aa23.8■■□□□ 1.4
CHRNA4-209ENST00000627000 MCM4P33991 863 aa23.79■■□□□ 1.4
CHRNA4-209ENST00000627000 RUFY2Q8WXA3 655 aa23.79■■□□□ 1.4
CHRNA4-209ENST00000627000 FAM227BQ96M60 508 aa23.79■■□□□ 1.4
CHRNA4-209ENST00000627000 PCCAP05165 728 aaPredicted RBP23.79■■□□□ 1.4
CHRNA4-209ENST00000627000 BARGINQ6ZT62 677 aa23.79■■□□□ 1.4
CHRNA4-209ENST00000627000 KIAA1211Q6ZU35 1233 aa23.79■■□□□ 1.4
CHRNA4-209ENST00000627000 UPF3BQ9BZI7 483 aaKnown RBP23.79■■□□□ 1.4
CHRNA4-209ENST00000627000 NDUFB9Q9Y6M9 179 aa23.79■■□□□ 1.4
CHRNA4-209ENST00000627000 PTH1RQ03431 593 aa23.78■■□□□ 1.4
CHRNA4-209ENST00000627000 RAB3GAP1Q15042 981 aa23.78■■□□□ 1.4
CHRNA4-209ENST00000627000 CCDC85AQ96PX6 553 aaPredicted RBP23.78■■□□□ 1.4
CHRNA4-209ENST00000627000 ATP5JP18859 108 aa23.78■■□□□ 1.4
CHRNA4-209ENST00000627000 NMIQ13287 307 aaPredicted RBP23.78■■□□□ 1.4
CHRNA4-209ENST00000627000 TNPO1Q92973 898 aaKnown RBP23.78■■□□□ 1.4
CHRNA4-209ENST00000627000 FSD1Q9BTV5 496 aa23.78■■□□□ 1.4
CHRNA4-209ENST00000627000 PUS3Q9BZE2 481 aaKnown RBP23.78■■□□□ 1.4
CHRNA4-209ENST00000627000 TBC1D2BQ9UPU7 963 aa23.78■■□□□ 1.4
CHRNA4-209ENST00000627000 EYA2O00167 538 aa23.77■■□□□ 1.4
CHRNA4-209ENST00000627000 NLRP10Q86W26 655 aa23.77■■□□□ 1.4
CHRNA4-209ENST00000627000 ZBTB38Q8NAP3 1195 aaPredicted RBP23.77■■□□□ 1.4
CHRNA4-209ENST00000627000 ANKRD36CQ5JPF3 1778 aa23.77■■□□□ 1.4
CHRNA4-209ENST00000627000 NUP98P52948 1817 aa23.77■■□□□ 1.4
CHRNA4-209ENST00000627000 RASEFQ8IZ41 740 aa23.76■■□□□ 1.39
CHRNA4-209ENST00000627000 SNX14Q9Y5W7 946 aa23.76■■□□□ 1.39
CHRNA4-209ENST00000627000 IL15P40933 162 aaPredicted RBP23.76■■□□□ 1.39
CHRNA4-209ENST00000627000 ZGPATQ8N5A5 531 aaKnown RBP23.76■■□□□ 1.39
CHRNA4-209ENST00000627000 C8orf37Q96NL8 207 aa23.76■■□□□ 1.39
CHRNA4-209ENST00000627000 IL6STP40189 918 aaPredicted RBP23.75■■□□□ 1.39
CHRNA4-209ENST00000627000 GSE1Q14687 1217 aa23.75■■□□□ 1.39
CHRNA4-209ENST00000627000 DZIP3Q86Y13 1208 aaKnown RBP23.75■■□□□ 1.39
CHRNA4-209ENST00000627000 A0A0D9SFI3 127 aa23.75■■□□□ 1.39
CHRNA4-209ENST00000627000 TIMM10P62072 90 aa23.75■■□□□ 1.39
CHRNA4-209ENST00000627000 FAM98CQ17RN3 349 aaKnown RBP23.75■■□□□ 1.39
CHRNA4-209ENST00000627000 NOL8Q76FK4 1167 aaKnown RBP23.75■■□□□ 1.39
CHRNA4-209ENST00000627000 NEUROD6Q96NK8 337 aa23.75■■□□□ 1.39
CHRNA4-209ENST00000627000 ATP6V1AP38606 617 aa23.74■■□□□ 1.39
CHRNA4-209ENST00000627000 TMX3Q96JJ7 454 aa23.74■■□□□ 1.39
CHRNA4-209ENST00000627000 PLA2G12BQ9BX93 195 aa23.74■■□□□ 1.39
CHRNA4-209ENST00000627000 KCNQ2O43526 872 aa23.74■■□□□ 1.39
CHRNA4-209ENST00000627000 CCDC57Q2TAC2 916 aa23.74■■□□□ 1.39
CHRNA4-209ENST00000627000 INTS5Q6P9B9 1019 aaKnown RBP23.74■■□□□ 1.39
CHRNA4-209ENST00000627000 HIP1O00291 1037 aa23.73■■□□□ 1.39
CHRNA4-209ENST00000627000 SSFA2P28290 1259 aa23.73■■□□□ 1.39
CHRNA4-209ENST00000627000 HSP90AB3PQ58FF7 597 aa23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms