RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 METAP2P50579 478 aaKnown RBP eCLIP13.17□□□□□ -0.3
CLIP1-219ENST00000620786 TAX1BP1Q86VP1 789 aa13.17□□□□□ -0.3
CLIP1-219ENST00000620786 RAB11FIP4Q86YS3 637 aa13.17□□□□□ -0.3
CLIP1-219ENST00000620786 JDP2Q8WYK2 163 aa13.17□□□□□ -0.3
CLIP1-219ENST00000620786 SLC4A4Q9Y6R1 1079 aa13.17□□□□□ -0.3
CLIP1-219ENST00000620786 FERMT2Q96AC1 680 aa13.17□□□□□ -0.3
CLIP1-219ENST00000620786 USP16Q9Y5T5 823 aa13.17□□□□□ -0.3
CLIP1-219ENST00000620786 MICU3Q86XE3 530 aa13.17□□□□□ -0.3
CLIP1-219ENST00000620786 CIZ1Q9ULV3 898 aaPredicted RBP13.17□□□□□ -0.3
CLIP1-219ENST00000620786 ANAPC15P60006 121 aa13.17□□□□□ -0.3
CLIP1-219ENST00000620786 ATP2B3Q16720 1220 aa13.17□□□□□ -0.3
CLIP1-219ENST00000620786 TPTE2Q6XPS3 522 aa13.17□□□□□ -0.3
CLIP1-219ENST00000620786 FILIP1Q7Z7B0 1213 aa13.17□□□□□ -0.3
CLIP1-219ENST00000620786 TCP11L1Q9NUJ3 509 aa13.17□□□□□ -0.3
CLIP1-219ENST00000620786 C11orf95C9JLR9 678 aaPredicted RBP13.17□□□□□ -0.3
CLIP1-219ENST00000620786 H0YHG0 523 aa13.17□□□□□ -0.3
CLIP1-219ENST00000620786 STX8Q9UNK0 236 aa13.17□□□□□ -0.3
CLIP1-219ENST00000620786 MAP3K1Q13233 1512 aa13.16□□□□□ -0.3
CLIP1-219ENST00000620786 CCDC191Q8NCU4 936 aa13.16□□□□□ -0.3
CLIP1-219ENST00000620786 LARP6Q9BRS8 491 aaKnown RBP13.16□□□□□ -0.3
CLIP1-219ENST00000620786 SLC26A6Q9BXS9 759 aa13.16□□□□□ -0.3
CLIP1-219ENST00000620786 RIMBP2O15034 1052 aa13.16□□□□□ -0.3
CLIP1-219ENST00000620786 VPS36Q86VN1 386 aa13.16□□□□□ -0.3
CLIP1-219ENST00000620786 PLEKHH1Q9ULM0 1364 aa13.16□□□□□ -0.3
CLIP1-219ENST00000620786 C20orf194Q5TEA3 1177 aa13.16□□□□□ -0.3
CLIP1-219ENST00000620786 SYCP3Q8IZU3 236 aa13.16□□□□□ -0.3
CLIP1-219ENST00000620786 LIMCH1Q9UPQ0 1083 aa13.16□□□□□ -0.3
CLIP1-219ENST00000620786 LMOD1P29536 600 aaPredicted RBP13.16□□□□□ -0.3
CLIP1-219ENST00000620786 NAA16Q6N069 864 aaPredicted RBP13.16□□□□□ -0.3
CLIP1-219ENST00000620786 CNNM3Q8NE01 707 aa13.16□□□□□ -0.3
CLIP1-219ENST00000620786 BICD1Q96G01 975 aa13.16□□□□□ -0.3
CLIP1-219ENST00000620786 ATP10BO94823 1461 aa13.16□□□□□ -0.3
CLIP1-219ENST00000620786 AMPD3Q01432 767 aa13.15□□□□□ -0.3
CLIP1-219ENST00000620786 ARHGAP29Q52LW3 1261 aa13.15□□□□□ -0.3
CLIP1-219ENST00000620786 STXBP4Q6ZWJ1 553 aa13.15□□□□□ -0.3
CLIP1-219ENST00000620786 PPP4R3BQ5MIZ7 849 aa13.15□□□□□ -0.3
CLIP1-219ENST00000620786 CKAP2LQ8IYA6 745 aa13.15□□□□□ -0.3
CLIP1-219ENST00000620786 BTG4Q9NY30 223 aa13.15□□□□□ -0.3
CLIP1-219ENST00000620786 PLS1Q14651 629 aa13.15□□□□□ -0.3
CLIP1-219ENST00000620786 CCDC178Q5BJE1 867 aa13.15□□□□□ -0.3
CLIP1-219ENST00000620786 TSHZ3Q63HK5 1081 aa13.15□□□□□ -0.3
CLIP1-219ENST00000620786 SCAND2PQ9GZW5 306 aaPredicted RBP13.15□□□□□ -0.3
CLIP1-219ENST00000620786 FAM193AP78312 1265 aa13.15□□□□□ -0.3
CLIP1-219ENST00000620786 STK32BQ9NY57 414 aa13.15□□□□□ -0.3
CLIP1-219ENST00000620786 PCDH11XQ9BZA7 1347 aa13.14□□□□□ -0.31
CLIP1-219ENST00000620786 PCDH11YQ9BZA8 1340 aa13.14□□□□□ -0.31
CLIP1-219ENST00000620786 BIVM-ERCC5R4GMW8 1640 aa13.14□□□□□ -0.31
CLIP1-219ENST00000620786 WTAPQ15007 396 aa13.14□□□□□ -0.31
CLIP1-219ENST00000620786 CCDC148Q8NFR7 591 aa13.14□□□□□ -0.31
CLIP1-219ENST00000620786 NEK1Q96PY6 1258 aa13.14□□□□□ -0.31
CLIP1-219ENST00000620786 KRT23Q9C075 422 aa13.14□□□□□ -0.31
CLIP1-219ENST00000620786 ANO10Q9NW15 660 aa13.14□□□□□ -0.31
CLIP1-219ENST00000620786 IL16Q14005 1332 aa13.14□□□□□ -0.31
CLIP1-219ENST00000620786 ECM2O94769 699 aaPredicted RBP13.14□□□□□ -0.31
CLIP1-219ENST00000620786 IFIT1BQ5T764 474 aaKnown RBP13.14□□□□□ -0.31
CLIP1-219ENST00000620786 NFATC2IPQ8NCF5 419 aa13.14□□□□□ -0.31
CLIP1-219ENST00000620786 ZC3H12CQ9C0D7 883 aaKnown RBP13.14□□□□□ -0.31
CLIP1-219ENST00000620786 ERLIN1O75477 346 aa13.14□□□□□ -0.31
CLIP1-219ENST00000620786 RBM17Q96I25 401 aaKnown RBP13.14□□□□□ -0.31
CLIP1-219ENST00000620786 TSPYL1Q9H0U9 437 aa13.14□□□□□ -0.31
CLIP1-219ENST00000620786 RPRD2Q5VT52 1461 aaKnown RBP13.14□□□□□ -0.31
CLIP1-219ENST00000620786 GNPATO15228 680 aa13.14□□□□□ -0.31
CLIP1-219ENST00000620786 CETN1Q12798 172 aa13.14□□□□□ -0.31
CLIP1-219ENST00000620786 EIF4A2Q14240 407 aaKnown RBP13.14□□□□□ -0.31
CLIP1-219ENST00000620786 TRAPPC3LQ5T215 181 aa13.14□□□□□ -0.31
CLIP1-219ENST00000620786 IDEP14735 1019 aa13.13□□□□□ -0.31
CLIP1-219ENST00000620786 LMBR1LQ6UX01 489 aa13.13□□□□□ -0.31
CLIP1-219ENST00000620786 CCDC112Q8NEF3 446 aa13.13□□□□□ -0.31
CLIP1-219ENST00000620786 EYA3Q99504 573 aa13.13□□□□□ -0.31
CLIP1-219ENST00000620786 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.13□□□□□ -0.31
CLIP1-219ENST00000620786 ABCC1P33527 1531 aa13.13□□□□□ -0.31
CLIP1-219ENST00000620786 ZRANB1Q9UGI0 708 aa13.13□□□□□ -0.31
CLIP1-219ENST00000620786 CCDC40Q4G0X9 1142 aa13.13□□□□□ -0.31
CLIP1-219ENST00000620786 TCERG1LQ5VWI1 586 aa13.13□□□□□ -0.31
CLIP1-219ENST00000620786 RALGAPBQ86X10 1494 aa13.13□□□□□ -0.31
CLIP1-219ENST00000620786 EIF4G3O43432 1585 aaKnown RBP13.13□□□□□ -0.31
CLIP1-219ENST00000620786 EZRP15311 586 aaKnown RBP13.13□□□□□ -0.31
CLIP1-219ENST00000620786 MAGEB6P1A0A0J9YX57 407 aa13.12□□□□□ -0.31
CLIP1-219ENST00000620786 GJB2P29033 226 aa13.12□□□□□ -0.31
CLIP1-219ENST00000620786 KSR2Q6VAB6 950 aa13.12□□□□□ -0.31
CLIP1-219ENST00000620786 CWC15Q9P013 229 aaKnown RBP13.12□□□□□ -0.31
CLIP1-219ENST00000620786 NSFL1CQ9UNZ2 370 aaKnown RBP13.12□□□□□ -0.31
CLIP1-219ENST00000620786 SYCE3A1L190 88 aa13.12□□□□□ -0.31
CLIP1-219ENST00000620786 GRM8O00222 908 aa13.12□□□□□ -0.31
CLIP1-219ENST00000620786 RHPN1Q8TCX5 695 aa13.12□□□□□ -0.31
CLIP1-219ENST00000620786 HMG20BQ9P0W2 317 aa13.12□□□□□ -0.31
CLIP1-219ENST00000620786 ORC3Q9UBD5 711 aaPredicted RBP13.12□□□□□ -0.31
CLIP1-219ENST00000620786 TBCAO75347 108 aaKnown RBP13.12□□□□□ -0.31
CLIP1-219ENST00000620786 ZFYP08048 801 aaPredicted RBP13.12□□□□□ -0.31
CLIP1-219ENST00000620786 MCM5P33992 734 aa13.12□□□□□ -0.31
CLIP1-219ENST00000620786 USP8P40818 1118 aa13.12□□□□□ -0.31
CLIP1-219ENST00000620786 PRKCSHP14314 528 aaPredicted RBP13.12□□□□□ -0.31
CLIP1-219ENST00000620786 MTIF2P46199 727 aaKnown RBP13.12□□□□□ -0.31
CLIP1-219ENST00000620786 TRAF1Q13077 416 aa13.12□□□□□ -0.31
CLIP1-219ENST00000620786 HEATR3Q7Z4Q2 680 aa13.12□□□□□ -0.31
CLIP1-219ENST00000620786 GRPEL1Q9HAV7 217 aa13.12□□□□□ -0.31
CLIP1-219ENST00000620786 FLT4P35916 1363 aa13.12□□□□□ -0.31
CLIP1-219ENST00000620786 IRS4O14654 1257 aaPredicted RBP13.12□□□□□ -0.31
CLIP1-219ENST00000620786 CTNNBL1Q8WYA6 563 aaPredicted RBP13.12□□□□□ -0.31
CLIP1-219ENST00000620786 ESR2Q92731 530 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms