RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 GPTP24298 496 aa20.7■□□□□ 0.9
BRCA1-228ENST00000618469 PDE6BP35913 854 aa20.7■□□□□ 0.9
BRCA1-228ENST00000618469 AIMP1Q12904 312 aaKnown RBP20.7■□□□□ 0.9
BRCA1-228ENST00000618469 NCBP3Q53F19 620 aaKnown RBP20.7■□□□□ 0.9
BRCA1-228ENST00000618469 ARFGEF2Q9Y6D5 1785 aa20.69■□□□□ 0.9
BRCA1-228ENST00000618469 FER1L6Q2WGJ9 1857 aa20.69■□□□□ 0.9
BRCA1-228ENST00000618469 GIGYF2Q6Y7W6 1299 aaKnown RBP20.69■□□□□ 0.9
BRCA1-228ENST00000618469 COPS6Q7L5N1 327 aa20.69■□□□□ 0.9
BRCA1-228ENST00000618469 DBF4Q9UBU7 674 aaPredicted RBP20.69■□□□□ 0.9
BRCA1-228ENST00000618469 IL16Q14005 1332 aa20.69■□□□□ 0.9
BRCA1-228ENST00000618469 UBN2Q6ZU65 1347 aa20.69■□□□□ 0.9
BRCA1-228ENST00000618469 CHADLQ6NUI6 762 aa20.68■□□□□ 0.9
BRCA1-228ENST00000618469 C8orf58Q8NAV2 365 aa20.68■□□□□ 0.9
BRCA1-228ENST00000618469 ABCC12Q96J65 1359 aa20.68■□□□□ 0.9
BRCA1-228ENST00000618469 IBTKQ9P2D0 1353 aaPredicted RBP20.68■□□□□ 0.9
BRCA1-228ENST00000618469 SLX4Q8IY92 1834 aa20.67■□□□□ 0.9
BRCA1-228ENST00000618469 TPTE2Q6XPS3 522 aa20.67■□□□□ 0.9
BRCA1-228ENST00000618469 CREBZFQ9NS37 354 aa20.67■□□□□ 0.9
BRCA1-228ENST00000618469 PDZRN3Q9UPQ7 1066 aa20.67■□□□□ 0.9
BRCA1-228ENST00000618469 GTF2E1P29083 439 aaPredicted RBP20.66■□□□□ 0.9
BRCA1-228ENST00000618469 NYXQ9GZU5 481 aa20.66■□□□□ 0.9
BRCA1-228ENST00000618469 FANCIQ9NVI1 1328 aa20.66■□□□□ 0.9
BRCA1-228ENST00000618469 NUTM1Q86Y26 1132 aa20.65■□□□□ 0.9
BRCA1-228ENST00000618469 ZNF34Q8IZ26 560 aa20.65■□□□□ 0.9
BRCA1-228ENST00000618469 TSPYL6Q8N831 410 aa20.65■□□□□ 0.9
BRCA1-228ENST00000618469 HYPKQ9NX55 129 aa20.64■□□□□ 0.89
BRCA1-228ENST00000618469 HSP90AB3PQ58FF7 597 aa20.63■□□□□ 0.89
BRCA1-228ENST00000618469 SUSD4Q5VX71 490 aa20.63■□□□□ 0.89
BRCA1-228ENST00000618469 WDR63Q8IWG1 891 aa20.63■□□□□ 0.89
BRCA1-228ENST00000618469 TAOK3Q9H2K8 898 aa20.63■□□□□ 0.89
BRCA1-228ENST00000618469 RIC1Q4ADV7 1423 aa20.62■□□□□ 0.89
BRCA1-228ENST00000618469 CCER2I3L3R5 266 aa20.62■□□□□ 0.89
BRCA1-228ENST00000618469 NTSR2O95665 410 aa20.62■□□□□ 0.89
BRCA1-228ENST00000618469 SRGNP10124 158 aa20.62■□□□□ 0.89
BRCA1-228ENST00000618469 PARP10Q53GL7 1025 aa20.62■□□□□ 0.89
BRCA1-228ENST00000618469 VEGFBP49765 207 aa20.61■□□□□ 0.89
BRCA1-228ENST00000618469 TWISTNBQ3B726 338 aaPredicted RBP20.61■□□□□ 0.89
BRCA1-228ENST00000618469 CCDC30Q5VVM6 783 aa20.61■□□□□ 0.89
BRCA1-228ENST00000618469 STYK1Q6J9G0 422 aa20.61■□□□□ 0.89
BRCA1-228ENST00000618469 PPP1R42Q7Z4L9 355 aa20.61■□□□□ 0.89
BRCA1-228ENST00000618469 PLBD2Q8NHP8 589 aa20.61■□□□□ 0.89
BRCA1-228ENST00000618469 MASTLQ96GX5 879 aa20.61■□□□□ 0.89
BRCA1-228ENST00000618469 CNTNAP1P78357 1384 aa20.6■□□□□ 0.89
BRCA1-228ENST00000618469 EAPPQ56P03 285 aaPredicted RBP20.6■□□□□ 0.89
BRCA1-228ENST00000618469 PHAXQ9H814 394 aaKnown RBP20.6■□□□□ 0.89
BRCA1-228ENST00000618469 LAMB2P55268 1798 aa20.59■□□□□ 0.89
BRCA1-228ENST00000618469 GOLGA2Q08379 1002 aa20.59■□□□□ 0.89
BRCA1-228ENST00000618469 TCIRG1Q13488 830 aa20.59■□□□□ 0.89
BRCA1-228ENST00000618469 PRPF40BQ6NWY9 871 aaKnown RBP20.59■□□□□ 0.89
BRCA1-228ENST00000618469 ANKRD13DQ6ZTN6 518 aa20.59■□□□□ 0.89
BRCA1-228ENST00000618469 CNKSR1Q969H4 720 aa20.59■□□□□ 0.89
BRCA1-228ENST00000618469 CHMP4AQ9BY43 222 aa20.59■□□□□ 0.89
BRCA1-228ENST00000618469 NPR1P16066 1061 aa20.58■□□□□ 0.89
BRCA1-228ENST00000618469 OLFM4Q6UX06 510 aa20.58■□□□□ 0.89
BRCA1-228ENST00000618469 NLRP10Q86W26 655 aa20.58■□□□□ 0.89
BRCA1-228ENST00000618469 UTP14AQ9BVJ6 771 aaKnown RBP20.58■□□□□ 0.89
BRCA1-228ENST00000618469 STK31Q9BXU1 1019 aa20.58■□□□□ 0.89
BRCA1-228ENST00000618469 SPINK5Q9NQ38 1064 aaPredicted RBP20.58■□□□□ 0.89
BRCA1-228ENST00000618469 KLRG2A4D1S0 409 aaPredicted RBP20.57■□□□□ 0.88
BRCA1-228ENST00000618469 TCERG1O14776 1098 aaKnown RBP20.57■□□□□ 0.88
BRCA1-228ENST00000618469 LBX1P52954 281 aa20.57■□□□□ 0.88
BRCA1-228ENST00000618469 DIEXFQ68CQ4 756 aaKnown RBP20.57■□□□□ 0.88
BRCA1-228ENST00000618469 AIDAQ96BJ3 306 aa20.57■□□□□ 0.88
BRCA1-228ENST00000618469 TAF1DQ9H5J8 278 aaPredicted RBP20.57■□□□□ 0.88
BRCA1-228ENST00000618469 CLEC11AQ9Y240 323 aa20.57■□□□□ 0.88
BRCA1-228ENST00000618469 RNF123Q5XPI4 1314 aa20.56■□□□□ 0.88
BRCA1-228ENST00000618469 PASKQ96RG2 1323 aa20.56■□□□□ 0.88
BRCA1-228ENST00000618469 DDX60Q8IY21 1712 aaKnown RBP20.56■□□□□ 0.88
BRCA1-228ENST00000618469 CTCFP49711 727 aaPredicted RBP20.56■□□□□ 0.88
BRCA1-228ENST00000618469 RIC3Q7Z5B4 369 aa20.56■□□□□ 0.88
BRCA1-228ENST00000618469 ZNF428Q96B54 188 aa20.56■□□□□ 0.88
BRCA1-228ENST00000618469 MYH16Q9H6N6 1097 aa20.56■□□□□ 0.88
BRCA1-228ENST00000618469 ZNF521Q96K83 1311 aa20.55■□□□□ 0.88
BRCA1-228ENST00000618469 ZNF541Q9H0D2 1346 aa20.55■□□□□ 0.88
BRCA1-228ENST00000618469 LTBP3Q9NS15 1303 aa20.55■□□□□ 0.88
BRCA1-228ENST00000618469 EXOSC9Q06265 439 aaKnown RBP20.55■□□□□ 0.88
BRCA1-228ENST00000618469 CRY2Q49AN0 593 aa20.55■□□□□ 0.88
BRCA1-228ENST00000618469 LDHDQ86WU2 507 aa20.55■□□□□ 0.88
BRCA1-228ENST00000618469 RPGRQ92834 1020 aaKnown RBP20.55■□□□□ 0.88
BRCA1-228ENST00000618469 PRDM10Q9NQV6 1147 aa20.55■□□□□ 0.88
BRCA1-228ENST00000618469 TMEM88BA6NKF7 163 aa20.54■□□□□ 0.88
BRCA1-228ENST00000618469 ATP5J2-PTCD1G3V325 749 aa20.54■□□□□ 0.88
BRCA1-228ENST00000618469 ITGBL1O95965 494 aaPredicted RBP20.54■□□□□ 0.88
BRCA1-228ENST00000618469 ZNF277Q9NRM2 450 aaPredicted RBP20.54■□□□□ 0.88
BRCA1-228ENST00000618469 TRMT112Q9UI30 125 aaKnown RBP20.54■□□□□ 0.88
BRCA1-228ENST00000618469 SCN4AP35499 1836 aa20.54■□□□□ 0.88
BRCA1-228ENST00000618469 SH3TC1Q8TE82 1336 aa20.53■□□□□ 0.88
BRCA1-228ENST00000618469 DDX58O95786 925 aaKnown RBP20.53■□□□□ 0.88
BRCA1-228ENST00000618469 C3orf67Q6ZVT6 689 aa20.53■□□□□ 0.88
BRCA1-228ENST00000618469 ISCA1Q9BUE6 129 aa20.53■□□□□ 0.88
BRCA1-228ENST00000618469 IQCA1LA6NCM1 817 aa20.52■□□□□ 0.88
BRCA1-228ENST00000618469 MAP1SQ66K74 1059 aaPredicted RBP20.52■□□□□ 0.88
BRCA1-228ENST00000618469 MYD88Q99836 296 aa20.52■□□□□ 0.88
BRCA1-228ENST00000618469 CACNA1FO60840 1977 aa20.52■□□□□ 0.87
BRCA1-228ENST00000618469 SOGA3Q5TF21 947 aa20.51■□□□□ 0.87
BRCA1-228ENST00000618469 NLRP3Q96P20 1036 aa20.51■□□□□ 0.87
BRCA1-228ENST00000618469 WBP1LQ9NX94 342 aa20.51■□□□□ 0.87
BRCA1-228ENST00000618469 SLC4A2P04920 1241 aa20.5■□□□□ 0.87
BRCA1-228ENST00000618469 HCLS1P14317 486 aaPredicted RBP20.5■□□□□ 0.87
BRCA1-228ENST00000618469 ALDH1B1P30837 517 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 127.3 ms