RNA–Protein interactions for RNA: ENST00000616383.1

MMP28-206, Transcript of matrix metallopeptidase 28, human

TSL 3

Gene MMP28, Length 696 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MMP28-206	ENST00000616383	PI4KAP1	Q8N8J0	262 aa		13.89	□□□□□ -0.19
MMP28-206	ENST00000616383	DNAAF4	Q8WXU2	420 aa		13.89	□□□□□ -0.19
MMP28-206	ENST00000616383	ATP10D	Q9P241	1426 aa		13.89	□□□□□ -0.19
MMP28-206	ENST00000616383	IL6ST	P40189	918 aa	Predicted RBP	13.88	□□□□□ -0.19
MMP28-206	ENST00000616383	SLC27A3	Q5K4L6	730 aa		13.88	□□□□□ -0.19
MMP28-206	ENST00000616383	ERICH6B	Q5W0A0	696 aa		13.88	□□□□□ -0.19
MMP28-206	ENST00000616383	INTS3	Q68E01	1043 aa	Known RBP	13.88	□□□□□ -0.19
MMP28-206	ENST00000616383	TTLL7	Q6ZT98	887 aa		13.88	□□□□□ -0.19
MMP28-206	ENST00000616383	LRRC4B	Q9NT99	713 aa		13.88	□□□□□ -0.19
MMP28-206	ENST00000616383	MAP3K2	Q9Y2U5	619 aa		13.88	□□□□□ -0.19
MMP28-206	ENST00000616383	COL15A1	P39059	1388 aa		13.87	□□□□□ -0.19
MMP28-206	ENST00000616383	PLSCR1	O15162	318 aa		13.87	□□□□□ -0.19
MMP28-206	ENST00000616383	CCT4	P50991	539 aa	Known RBP	13.87	□□□□□ -0.19
MMP28-206	ENST00000616383	TXNRD1	Q16881	649 aa		13.87	□□□□□ -0.19
MMP28-206	ENST00000616383	RC3H1	Q5TC82	1133 aa	Known RBP	13.87	□□□□□ -0.19
MMP28-206	ENST00000616383	RIC3	Q7Z5B4	369 aa		13.87	□□□□□ -0.19
MMP28-206	ENST00000616383	DDX19B	Q9UMR2	479 aa		13.87	□□□□□ -0.19
MMP28-206	ENST00000616383	PLCG2	P16885	1265 aa		13.86	□□□□□ -0.19
MMP28-206	ENST00000616383	EIF5	P55010	431 aa	Known RBP	13.86	□□□□□ -0.19
MMP28-206	ENST00000616383	KIF6	Q6ZMV9	814 aa		13.86	□□□□□ -0.19
MMP28-206	ENST00000616383	ANKRD13D	Q6ZTN6	518 aa		13.86	□□□□□ -0.19
MMP28-206	ENST00000616383	PLBD2	Q8NHP8	589 aa		13.86	□□□□□ -0.19
MMP28-206	ENST00000616383	GNPAT	O15228	680 aa		13.85	□□□□□ -0.19
MMP28-206	ENST00000616383	NPM2	Q86SE8	214 aa	Known RBP	13.85	□□□□□ -0.19
MMP28-206	ENST00000616383	ZBTB3	Q9H5J0	574 aa		13.85	□□□□□ -0.19
MMP28-206	ENST00000616383	QSER1	Q2KHR3	1735 aa		13.84	□□□□□ -0.19
MMP28-206	ENST00000616383	BEND3	Q5T5X7	828 aa		13.84	□□□□□ -0.19
MMP28-206	ENST00000616383	DCAF8	Q5TAQ9	597 aa		13.84	□□□□□ -0.19
MMP28-206	ENST00000616383	DZIP3	Q86Y13	1208 aa	Known RBP	13.84	□□□□□ -0.19
MMP28-206	ENST00000616383	CCDC125	Q86Z20	511 aa		13.84	□□□□□ -0.19
MMP28-206	ENST00000616383	SLAIN1	Q8ND83	568 aa		13.84	□□□□□ -0.19
MMP28-206	ENST00000616383	AK7	Q96M32	723 aa		13.84	□□□□□ -0.19
MMP28-206	ENST00000616383	ARX	Q96QS3	562 aa		13.84	□□□□□ -0.19
MMP28-206	ENST00000616383	METTL22	Q9BUU2	404 aa	Predicted RBP	13.84	□□□□□ -0.19
MMP28-206	ENST00000616383	SRCIN1	Q9C0H9	1055 aa		13.84	□□□□□ -0.19
MMP28-206	ENST00000616383	MAP3K15	Q6ZN16	1313 aa		13.84	□□□□□ -0.19
MMP28-206	ENST00000616383	RPS6KA4	O75676	772 aa		13.83	□□□□□ -0.2
MMP28-206	ENST00000616383	NEXN	Q0ZGT2	675 aa		13.83	□□□□□ -0.2
MMP28-206	ENST00000616383	MYD88	Q99836	296 aa		13.83	□□□□□ -0.2
MMP28-206	ENST00000616383	TBC1D2B	Q9UPU7	963 aa		13.83	□□□□□ -0.2
MMP28-206	ENST00000616383	COL24A1	Q17RW2	1714 aa		13.82	□□□□□ -0.2
MMP28-206	ENST00000616383		A0A087WZG4	1122 aa		13.82	□□□□□ -0.2
MMP28-206	ENST00000616383	EN1	Q05925	392 aa	Predicted RBP	13.82	□□□□□ -0.2
MMP28-206	ENST00000616383	SF3B2	Q13435	895 aa	Known RBP	13.82	□□□□□ -0.2
MMP28-206	ENST00000616383	CWF19L2	Q2TBE0	894 aa	Known RBP	13.82	□□□□□ -0.2
MMP28-206	ENST00000616383	LINS1	Q8NG48	757 aa		13.82	□□□□□ -0.2
MMP28-206	ENST00000616383	PPP4R2	Q9NY27	417 aa		13.82	□□□□□ -0.2
MMP28-206	ENST00000616383	RTCB	Q9Y3I0	505 aa	Known RBP	13.82	□□□□□ -0.2
MMP28-206	ENST00000616383	CASZ1	Q86V15	1759 aa		13.81	□□□□□ -0.2
MMP28-206	ENST00000616383	ZBTB7B	O15156	539 aa	Predicted RBP	13.81	□□□□□ -0.2
MMP28-206	ENST00000616383	ALDH1L1	O75891	902 aa		13.81	□□□□□ -0.2
MMP28-206	ENST00000616383	IGKV5-2	P06315	115 aa		13.81	□□□□□ -0.2
MMP28-206	ENST00000616383	HMGB2	P26583	209 aa	Known RBP	13.81	□□□□□ -0.2
MMP28-206	ENST00000616383	BAG6	P46379	1132 aa		13.81	□□□□□ -0.2
MMP28-206	ENST00000616383	AAMP	Q13685	434 aa		13.81	□□□□□ -0.2
MMP28-206	ENST00000616383	SMIM5	Q71RC9	77 aa		13.81	□□□□□ -0.2
MMP28-206	ENST00000616383	AMIGO3	Q86WK7	504 aa		13.81	□□□□□ -0.2
MMP28-206	ENST00000616383	MEIS3	Q99687	375 aa		13.81	□□□□□ -0.2
MMP28-206	ENST00000616383	CHMP4B	Q9H444	224 aa	Known RBP	13.81	□□□□□ -0.2
MMP28-206	ENST00000616383	ZBTB40	Q9NUA8	1239 aa		13.81	□□□□□ -0.2
MMP28-206	ENST00000616383	LAMB2	P55268	1798 aa		13.81	□□□□□ -0.2
MMP28-206	ENST00000616383	NEURL1B	A8MQ27	555 aa		13.8	□□□□□ -0.2
MMP28-206	ENST00000616383	ERVV-1	B6SEH8	477 aa		13.8	□□□□□ -0.2
MMP28-206	ENST00000616383	ATP5J2-PTCD1	G3V325	749 aa		13.8	□□□□□ -0.2
MMP28-206	ENST00000616383	CAMTA2	O94983	1202 aa		13.8	□□□□□ -0.2
MMP28-206	ENST00000616383	EZH2	Q15910	746 aa	Known RBP	13.8	□□□□□ -0.2
MMP28-206	ENST00000616383	CAMKK2	Q96RR4	588 aa		13.8	□□□□□ -0.2
MMP28-206	ENST00000616383	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.8	□□□□□ -0.2
MMP28-206	ENST00000616383	MYH3	P11055	1940 aa		13.8	□□□□□ -0.2
MMP28-206	ENST00000616383	PHF14	O94880	888 aa		13.79	□□□□□ -0.2
MMP28-206	ENST00000616383	HLF	Q16534	295 aa		13.79	□□□□□ -0.2
MMP28-206	ENST00000616383	ZNF827	Q17R98	1081 aa		13.79	□□□□□ -0.2
MMP28-206	ENST00000616383	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.79	□□□□□ -0.2
MMP28-206	ENST00000616383	C1orf115	Q9H7X2	142 aa		13.79	□□□□□ -0.2
MMP28-206	ENST00000616383	GNAI3	P08754	354 aa		13.78	□□□□□ -0.2
MMP28-206	ENST00000616383	TCIRG1	Q13488	830 aa		13.78	□□□□□ -0.2
MMP28-206	ENST00000616383	HSP90AB3P	Q58FF7	597 aa		13.78	□□□□□ -0.2
MMP28-206	ENST00000616383	DEFB132	Q7Z7B7	95 aa		13.78	□□□□□ -0.2
MMP28-206	ENST00000616383	ISCA1	Q9BUE6	129 aa		13.78	□□□□□ -0.2
MMP28-206	ENST00000616383	USP44	Q9H0E7	712 aa		13.78	□□□□□ -0.2
MMP28-206	ENST00000616383	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.77	□□□□□ -0.21
MMP28-206	ENST00000616383	UBTFL1	P0CB47	393 aa	Predicted RBP	13.77	□□□□□ -0.21
MMP28-206	ENST00000616383	PYGB	P11216	843 aa		13.77	□□□□□ -0.21
MMP28-206	ENST00000616383	GPT	P24298	496 aa		13.77	□□□□□ -0.21
MMP28-206	ENST00000616383	SSFA2	P28290	1259 aa		13.77	□□□□□ -0.21
MMP28-206	ENST00000616383	GCKR	Q14397	625 aa		13.77	□□□□□ -0.21
MMP28-206	ENST00000616383	TRAPPC3L	Q5T215	181 aa		13.77	□□□□□ -0.21
MMP28-206	ENST00000616383	B4GALNT3	Q6L9W6	998 aa		13.77	□□□□□ -0.21
MMP28-206	ENST00000616383	DDX60	Q8IY21	1712 aa	Known RBP	13.77	□□□□□ -0.21
MMP28-206	ENST00000616383	ARHGEF1	Q92888	912 aa	Known RBP	13.77	□□□□□ -0.21
MMP28-206	ENST00000616383	CCDC136	Q96JN2	1154 aa		13.77	□□□□□ -0.21
MMP28-206	ENST00000616383	CWC25	Q9NXE8	425 aa	Predicted RBP	13.77	□□□□□ -0.21
MMP28-206	ENST00000616383	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.77	□□□□□ -0.21
MMP28-206	ENST00000616383	SRP68	Q9UHB9	627 aa	Known RBP	13.77	□□□□□ -0.21
MMP28-206	ENST00000616383	NARF	Q9UHQ1	456 aa		13.77	□□□□□ -0.21
MMP28-206	ENST00000616383	USP42	Q9H9J4	1324 aa	Known RBP	13.76	□□□□□ -0.21
MMP28-206	ENST00000616383	GRM8	O00222	908 aa		13.76	□□□□□ -0.21
MMP28-206	ENST00000616383	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.76	□□□□□ -0.21
MMP28-206	ENST00000616383	CCDC191	Q8NCU4	936 aa		13.76	□□□□□ -0.21
MMP28-206	ENST00000616383	ZNF652	Q9Y2D9	606 aa		13.76	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms