RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 CCDC148Q8NFR7 591 aa16.23■□□□□ 0.19
CPSF1-212ENST00000616140 ZNF287Q9HBT7 754 aa16.23■□□□□ 0.19
CPSF1-212ENST00000616140 PA2G4Q9UQ80 394 aaKnown RBP16.23■□□□□ 0.19
CPSF1-212ENST00000616140 MTHFSDQ2M296 383 aaKnown RBP16.22■□□□□ 0.19
CPSF1-212ENST00000616140 NEFHP12036 1026 aa16.22■□□□□ 0.19
CPSF1-212ENST00000616140 ZNF76P36508 570 aa16.22■□□□□ 0.19
CPSF1-212ENST00000616140 SPA17Q15506 151 aa16.22■□□□□ 0.19
CPSF1-212ENST00000616140 NCOA7Q8NI08 942 aa16.22■□□□□ 0.19
CPSF1-212ENST00000616140 CCDC194A0A1B0GVG4 234 aa16.22■□□□□ 0.19
CPSF1-212ENST00000616140 SEC63Q9UGP8 760 aaKnown RBP16.22■□□□□ 0.19
CPSF1-212ENST00000616140 KLF18A0A0U1RQI7 1052 aa16.21■□□□□ 0.19
CPSF1-212ENST00000616140 METAP2P50579 478 aaKnown RBP eCLIP16.21■□□□□ 0.199e-7■■■□□ 15.9
CPSF1-212ENST00000616140 TAF4BQ92750 862 aa16.21■□□□□ 0.19
CPSF1-212ENST00000616140 GBP3Q9H0R5 595 aa16.21■□□□□ 0.19
CPSF1-212ENST00000616140 PHAXQ9H814 394 aaKnown RBP16.21■□□□□ 0.19
CPSF1-212ENST00000616140 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.21■□□□□ 0.194e-7■■■■■ 75.7
CPSF1-212ENST00000616140 NLRP5P59047 1200 aa16.21■□□□□ 0.19
CPSF1-212ENST00000616140 CCDC102BQ68D86 513 aa16.21■□□□□ 0.19
CPSF1-212ENST00000616140 LMBR1LQ6UX01 489 aa16.21■□□□□ 0.19
CPSF1-212ENST00000616140 TMX1Q9H3N1 280 aa16.21■□□□□ 0.19
CPSF1-212ENST00000616140 TTC12Q9H892 705 aaPredicted RBP16.21■□□□□ 0.19
CPSF1-212ENST00000616140 TAX1BP1Q86VP1 789 aa16.21■□□□□ 0.18
CPSF1-212ENST00000616140 FAM200AQ8TCP9 573 aa16.21■□□□□ 0.18
CPSF1-212ENST00000616140 CCDC186Q7Z3E2 898 aa16.2■□□□□ 0.18
CPSF1-212ENST00000616140 CATIPQ7Z7H3 387 aa16.2■□□□□ 0.18
CPSF1-212ENST00000616140 ALDH1L1O75891 902 aa16.2■□□□□ 0.18
CPSF1-212ENST00000616140 JAKMIP3Q5VZ66 844 aa16.2■□□□□ 0.18
CPSF1-212ENST00000616140 KSR2Q6VAB6 950 aa16.2■□□□□ 0.18
CPSF1-212ENST00000616140 ZNF444Q8N0Y2 327 aaPredicted RBP16.2■□□□□ 0.18
CPSF1-212ENST00000616140 F13A1P00488 732 aa16.2■□□□□ 0.18
CPSF1-212ENST00000616140 CASQ1P31415 396 aa16.2■□□□□ 0.18
CPSF1-212ENST00000616140 FKBP15Q5T1M5 1219 aa16.2■□□□□ 0.18
CPSF1-212ENST00000616140 CACNA2D4Q7Z3S7 1137 aa16.2■□□□□ 0.18
CPSF1-212ENST00000616140 NUP88Q99567 741 aaPredicted RBP16.2■□□□□ 0.18
CPSF1-212ENST00000616140 SLC26A6Q9BXS9 759 aa16.2■□□□□ 0.18
CPSF1-212ENST00000616140 SYCP2Q9BX26 1530 aa16.2■□□□□ 0.18
CPSF1-212ENST00000616140 TAF3Q5VWG9 929 aa16.19■□□□□ 0.18
CPSF1-212ENST00000616140 PUS7Q96PZ0 661 aaKnown RBP16.19■□□□□ 0.18
CPSF1-212ENST00000616140 DMRT2Q9Y5R5 561 aa16.19■□□□□ 0.18
CPSF1-212ENST00000616140 PPIP5K1Q6PFW1 1433 aa16.19■□□□□ 0.18
CPSF1-212ENST00000616140 TTC21AQ8NDW8 1320 aa16.19■□□□□ 0.18
CPSF1-212ENST00000616140 ANO6Q4KMQ2 910 aa16.19■□□□□ 0.18
CPSF1-212ENST00000616140 SNW1Q13573 536 aaKnown RBP16.19■□□□□ 0.18
CPSF1-212ENST00000616140 ENOX2Q16206 610 aaKnown RBP16.19■□□□□ 0.18
CPSF1-212ENST00000616140 ANKIB1Q9P2G1 1089 aa16.19■□□□□ 0.18
CPSF1-212ENST00000616140 MPHOSPH10O00566 681 aaKnown RBP16.19■□□□□ 0.18
CPSF1-212ENST00000616140 ZBTB7BO15156 539 aaPredicted RBP16.19■□□□□ 0.18
CPSF1-212ENST00000616140 TTF1Q15361 905 aaPredicted RBP16.19■□□□□ 0.18
CPSF1-212ENST00000616140 LINS1Q8NG48 757 aa16.19■□□□□ 0.18
CPSF1-212ENST00000616140 ZKSCAN5Q9Y2L8 839 aa16.19■□□□□ 0.18
CPSF1-212ENST00000616140 TRAPPC8Q9Y2L5 1435 aa16.19■□□□□ 0.18
CPSF1-212ENST00000616140 DUOX2Q9NRD8 1548 aa16.18■□□□□ 0.18
CPSF1-212ENST00000616140 DNA2P51530 1060 aa16.18■□□□□ 0.18
CPSF1-212ENST00000616140 NOLC1Q14978 699 aaKnown RBP eCLIP16.18■□□□□ 0.18
CPSF1-212ENST00000616140 CNKSR2Q8WXI2 1034 aa16.18■□□□□ 0.18
CPSF1-212ENST00000616140 DYNC1I1O14576 645 aa16.18■□□□□ 0.18
CPSF1-212ENST00000616140 POLR3GO15318 223 aaPredicted RBP16.18■□□□□ 0.18
CPSF1-212ENST00000616140 MFSD6Q6ZSS7 791 aa16.18■□□□□ 0.18
CPSF1-212ENST00000616140 PRIMPOLQ96LW4 560 aa16.18■□□□□ 0.18
CPSF1-212ENST00000616140 ZPR1O75312 459 aa16.18■□□□□ 0.18
CPSF1-212ENST00000616140 AK2P54819 239 aa16.18■□□□□ 0.18
CPSF1-212ENST00000616140 CGNQ9P2M7 1197 aaKnown RBP16.18■□□□□ 0.18
CPSF1-212ENST00000616140 PPP1R1BQ9UD71 204 aaPredicted RBP16.18■□□□□ 0.18
CPSF1-212ENST00000616140 RAPGEF6Q8TEU7 1601 aa16.18■□□□□ 0.18
CPSF1-212ENST00000616140 SYKP43405 635 aa16.17■□□□□ 0.18
CPSF1-212ENST00000616140 TCOF1Q13428 1488 aaKnown RBP16.17■□□□□ 0.18
CPSF1-212ENST00000616140 KAT6BQ8WYB5 2073 aa16.17■□□□□ 0.18
CPSF1-212ENST00000616140 IDEP14735 1019 aa16.17■□□□□ 0.18
CPSF1-212ENST00000616140 UBA7P41226 1012 aa16.17■□□□□ 0.18
CPSF1-212ENST00000616140 CWF19L2Q2TBE0 894 aaKnown RBP16.17■□□□□ 0.18
CPSF1-212ENST00000616140 PPP4R3BQ5MIZ7 849 aa16.17■□□□□ 0.18
CPSF1-212ENST00000616140 USP26Q9BXU7 913 aa16.17■□□□□ 0.18
CPSF1-212ENST00000616140 A0A1W2PP64 1363 aa16.17■□□□□ 0.18
CPSF1-212ENST00000616140 ADAMTS2O95450 1211 aa16.17■□□□□ 0.18
CPSF1-212ENST00000616140 MCMDC2Q4G0Z9 681 aa16.17■□□□□ 0.18
CPSF1-212ENST00000616140 HSP90AA4PQ58FG1 418 aa16.17■□□□□ 0.18
CPSF1-212ENST00000616140 Q6ZUG5 572 aa16.17■□□□□ 0.18
CPSF1-212ENST00000616140 DNAJC25Q9H1X3 360 aa16.17■□□□□ 0.18
CPSF1-212ENST00000616140 DCAF8L1A6NGE4 600 aa16.16■□□□□ 0.18
CPSF1-212ENST00000616140 SKILP12757 684 aa16.16■□□□□ 0.18
CPSF1-212ENST00000616140 CHMLP26374 656 aa16.16■□□□□ 0.18
CPSF1-212ENST00000616140 RAB34Q9BZG1 259 aa16.16■□□□□ 0.18
CPSF1-212ENST00000616140 EXOC5O00471 708 aa16.16■□□□□ 0.18
CPSF1-212ENST00000616140 YEATS4O95619 227 aa16.16■□□□□ 0.18
CPSF1-212ENST00000616140 RBM25P49756 843 aaKnown RBP16.16■□□□□ 0.18
CPSF1-212ENST00000616140 GNG11P61952 73 aa16.16■□□□□ 0.18
CPSF1-212ENST00000616140 PIP4K2BP78356 416 aa16.16■□□□□ 0.18
CPSF1-212ENST00000616140 NMIQ13287 307 aaPredicted RBP16.16■□□□□ 0.18
CPSF1-212ENST00000616140 TDRD12Q587J7 1177 aaKnown RBP16.16■□□□□ 0.18
CPSF1-212ENST00000616140 OTUD7AQ8TE49 926 aaPredicted RBP16.16■□□□□ 0.18
CPSF1-212ENST00000616140 ZSWIM4Q9H7M6 989 aa16.16■□□□□ 0.18
CPSF1-212ENST00000616140 A2MP01023 1474 aa16.16■□□□□ 0.18
CPSF1-212ENST00000616140 TEX13AQ9BXU3 409 aaPredicted RBP16.16■□□□□ 0.18
CPSF1-212ENST00000616140 NCKAP5LQ9HCH0 1330 aa16.16■□□□□ 0.18
CPSF1-212ENST00000616140 SPDYE4A6NLX3 237 aa16.15■□□□□ 0.18
CPSF1-212ENST00000616140 CEP135Q66GS9 1140 aa16.15■□□□□ 0.18
CPSF1-212ENST00000616140 CRACR2BQ8N4Y2 399 aaPredicted RBP16.15■□□□□ 0.18
CPSF1-212ENST00000616140 EYA1Q99502 592 aa16.15■□□□□ 0.18
CPSF1-212ENST00000616140 UBA5Q9GZZ9 404 aa16.15■□□□□ 0.18
CPSF1-212ENST00000616140 SOS1Q07889 1333 aaPredicted RBP16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 197.8 ms