RNA–Protein interactions for RNA: ENST00000612369.4

VCX3A-203, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 812 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-203ENST00000612369 NMRK2Q9NPI5 230 aa23.63■■□□□ 1.37
VCX3A-203ENST00000612369 CCDC88AQ3V6T2 1871 aa23.62■■□□□ 1.37
VCX3A-203ENST00000612369 CCDC93Q567U6 631 aa23.62■■□□□ 1.37
VCX3A-203ENST00000612369 UTP14AQ9BVJ6 771 aaKnown RBP23.62■■□□□ 1.37
VCX3A-203ENST00000612369 HYPKQ9NX55 129 aa23.62■■□□□ 1.37
VCX3A-203ENST00000612369 TCIRG1Q13488 830 aa23.61■■□□□ 1.37
VCX3A-203ENST00000612369 GLTPD2A6NH11 291 aa23.6■■□□□ 1.37
VCX3A-203ENST00000612369 HOXA10P31260 410 aaPredicted RBP23.6■■□□□ 1.37
VCX3A-203ENST00000612369 SLC10A5Q5PT55 438 aa23.6■■□□□ 1.37
VCX3A-203ENST00000612369 PLBD2Q8NHP8 589 aa23.6■■□□□ 1.37
VCX3A-203ENST00000612369 RPGRQ92834 1020 aaKnown RBP23.6■■□□□ 1.37
VCX3A-203ENST00000612369 TNRC6CQ9HCJ0 1690 aaKnown RBP23.6■■□□□ 1.37
VCX3A-203ENST00000612369 DICER1Q9UPY3 1922 aaKnown RBP23.59■■□□□ 1.37
VCX3A-203ENST00000612369 ANKRD13DQ6ZTN6 518 aa23.59■■□□□ 1.37
VCX3A-203ENST00000612369 RTKN2Q8IZC4 609 aa23.59■■□□□ 1.37
VCX3A-203ENST00000612369 ANKRD36CQ5JPF3 1778 aa23.59■■□□□ 1.37
VCX3A-203ENST00000612369 DPY19L2Q6NUT2 758 aa23.58■■□□□ 1.37
VCX3A-203ENST00000612369 NLRP10Q86W26 655 aa23.58■■□□□ 1.37
VCX3A-203ENST00000612369 C16orf71Q8IYS4 520 aaPredicted RBP23.58■■□□□ 1.37
VCX3A-203ENST00000612369 NLRP3Q96P20 1036 aa23.58■■□□□ 1.37
VCX3A-203ENST00000612369 TIAM2Q8IVF5 1701 aa23.58■■□□□ 1.37
VCX3A-203ENST00000612369 CC2D2BQ6DHV5 1058 aa23.57■■□□□ 1.36
VCX3A-203ENST00000612369 RBM17Q96I25 401 aaKnown RBP23.57■■□□□ 1.36
VCX3A-203ENST00000612369 CRAMP1Q96RY5 1269 aa23.57■■□□□ 1.36
VCX3A-203ENST00000612369 RRAGCQ9HB90 399 aa23.57■■□□□ 1.36
VCX3A-203ENST00000612369 HSPA6P17066 643 aa23.56■■□□□ 1.36
VCX3A-203ENST00000612369 FKBP4Q02790 459 aaKnown RBP eCLIP23.56■■□□□ 1.36
VCX3A-203ENST00000612369 GRIPAP1Q4V328 841 aa23.56■■□□□ 1.36
VCX3A-203ENST00000612369 WWC1Q8IX03 1113 aa23.56■■□□□ 1.36
VCX3A-203ENST00000612369 RBM46Q8TBY0 533 aaKnown RBP23.56■■□□□ 1.36
VCX3A-203ENST00000612369 ELL2O00472 640 aaPredicted RBP23.54■■□□□ 1.36
VCX3A-203ENST00000612369 C8orf58Q8NAV2 365 aa23.54■■□□□ 1.36
VCX3A-203ENST00000612369 TRMT112Q9UI30 125 aaKnown RBP23.54■■□□□ 1.36
VCX3A-203ENST00000612369 IL16Q14005 1332 aa23.54■■□□□ 1.36
VCX3A-203ENST00000612369 VEGFAP15692 232 aaPredicted RBP23.53■■□□□ 1.36
VCX3A-203ENST00000612369 CCDC30Q5VVM6 783 aa23.53■■□□□ 1.36
VCX3A-203ENST00000612369 ISCA1Q9BUE6 129 aa23.53■■□□□ 1.36
VCX3A-203ENST00000612369 SH3TC1Q8TE82 1336 aa23.53■■□□□ 1.36
VCX3A-203ENST00000612369 PSMD1Q99460 953 aa23.52■■□□□ 1.36
VCX3A-203ENST00000612369 GOLGA2Q08379 1002 aa23.51■■□□□ 1.35
VCX3A-203ENST00000612369 TRIM28Q13263 835 aaKnown RBP23.51■■□□□ 1.35
VCX3A-203ENST00000612369 OLFM4Q6UX06 510 aa23.51■■□□□ 1.35
VCX3A-203ENST00000612369 C3orf67Q6ZVT6 689 aa23.51■■□□□ 1.35
VCX3A-203ENST00000612369 FSTL1Q12841 308 aa23.5■■□□□ 1.35
VCX3A-203ENST00000612369 SNED1Q8TER0 1413 aa23.5■■□□□ 1.35
VCX3A-203ENST00000612369 RIC3Q7Z5B4 369 aa23.49■■□□□ 1.35
VCX3A-203ENST00000612369 SYNE4Q8N205 404 aa23.49■■□□□ 1.35
VCX3A-203ENST00000612369 TMX4Q9H1E5 349 aaPredicted RBP23.49■■□□□ 1.35
VCX3A-203ENST00000612369 WDR90Q96KV7 1748 aa23.48■■□□□ 1.35
VCX3A-203ENST00000612369 PPEF1O14829 653 aaPredicted RBP23.48■■□□□ 1.35
VCX3A-203ENST00000612369 HCLS1P14317 486 aaPredicted RBP23.48■■□□□ 1.35
VCX3A-203ENST00000612369 WDR63Q8IWG1 891 aa23.48■■□□□ 1.35
VCX3A-203ENST00000612369 TSR2Q969E8 191 aaKnown RBP23.48■■□□□ 1.35
VCX3A-203ENST00000612369 PHAXQ9H814 394 aaKnown RBP23.48■■□□□ 1.35
VCX3A-203ENST00000612369 ZNF277Q9NRM2 450 aaPredicted RBP23.48■■□□□ 1.35
VCX3A-203ENST00000612369 DDX58O95786 925 aaKnown RBP23.47■■□□□ 1.35
VCX3A-203ENST00000612369 IARSP41252 1262 aaKnown RBP23.47■■□□□ 1.35
VCX3A-203ENST00000612369 TSPYL6Q8N831 410 aa23.47■■□□□ 1.35
VCX3A-203ENST00000612369 ATP5J2-PTCD1G3V325 749 aa23.46■■□□□ 1.35
VCX3A-203ENST00000612369 BBOX1O75936 387 aa23.46■■□□□ 1.35
VCX3A-203ENST00000612369 ATP6V0A2Q9Y487 856 aa23.46■■□□□ 1.35
VCX3A-203ENST00000612369 ABCC4O15439 1325 aa23.45■■□□□ 1.34
VCX3A-203ENST00000612369 APLP1P51693 650 aa23.45■■□□□ 1.34
VCX3A-203ENST00000612369 TWISTNBQ3B726 338 aaPredicted RBP23.45■■□□□ 1.34
VCX3A-203ENST00000612369 DDX46Q7L014 1031 aaKnown RBP23.45■■□□□ 1.34
VCX3A-203ENST00000612369 SMC1BQ8NDV3 1235 aa23.45■■□□□ 1.34
VCX3A-203ENST00000612369 STK31Q9BXU1 1019 aa23.45■■□□□ 1.34
VCX3A-203ENST00000612369 CEP350Q5VT06 3117 aa23.45■■□□□ 1.34
VCX3A-203ENST00000612369 POTECB2RU33 542 aa23.44■■□□□ 1.34
VCX3A-203ENST00000612369 DDNO94850 711 aaPredicted RBP23.44■■□□□ 1.34
VCX3A-203ENST00000612369 JDP2Q8WYK2 163 aa23.44■■□□□ 1.34
VCX3A-203ENST00000612369 FAM89AQ96GI7 184 aa23.44■■□□□ 1.34
VCX3A-203ENST00000612369 LAMB2P55268 1798 aa23.44■■□□□ 1.34
VCX3A-203ENST00000612369 HSP90B1P14625 803 aaKnown RBP23.43■■□□□ 1.34
VCX3A-203ENST00000612369 TMC4Q7Z404 712 aa23.43■■□□□ 1.34
VCX3A-203ENST00000612369 FAM9BQ8IZU0 186 aa23.43■■□□□ 1.34
VCX3A-203ENST00000612369 FZD9O00144 591 aa23.42■■□□□ 1.34
VCX3A-203ENST00000612369 GRAPQ13588 217 aa23.42■■□□□ 1.34
VCX3A-203ENST00000612369 SF3B3Q15393 1217 aaKnown RBP23.42■■□□□ 1.34
VCX3A-203ENST00000612369 SP8Q8IXZ3 490 aa23.42■■□□□ 1.34
VCX3A-203ENST00000612369 CCDC191Q8NCU4 936 aa23.42■■□□□ 1.34
VCX3A-203ENST00000612369 GRAPLQ8TC17 118 aaPredicted RBP23.42■■□□□ 1.34
VCX3A-203ENST00000612369 L3MBTL3Q96JM7 780 aaPredicted RBP23.42■■□□□ 1.34
VCX3A-203ENST00000612369 VPS33BQ9H267 617 aa23.42■■□□□ 1.34
VCX3A-203ENST00000612369 IQCA1LA6NCM1 817 aa23.41■■□□□ 1.34
VCX3A-203ENST00000612369 TCERG1O14776 1098 aaKnown RBP23.41■■□□□ 1.34
VCX3A-203ENST00000612369 ZBTB38Q8NAP3 1195 aaPredicted RBP23.41■■□□□ 1.34
VCX3A-203ENST00000612369 MYD88Q99836 296 aa23.41■■□□□ 1.34
VCX3A-203ENST00000612369 METTL22Q9BUU2 404 aaPredicted RBP23.41■■□□□ 1.34
VCX3A-203ENST00000612369 SALL2Q9Y467 1007 aaPredicted RBP23.41■■□□□ 1.34
VCX3A-203ENST00000612369 FANCIQ9NVI1 1328 aa23.4■■□□□ 1.34
VCX3A-203ENST00000612369 DDX60Q8IY21 1712 aaKnown RBP23.4■■□□□ 1.34
VCX3A-203ENST00000612369 KSR2Q6VAB6 950 aa23.4■■□□□ 1.34
VCX3A-203ENST00000612369 SUPT20HQ8NEM7 779 aa23.4■■□□□ 1.34
VCX3A-203ENST00000612369 IRS4O14654 1257 aaPredicted RBP23.39■■□□□ 1.33
VCX3A-203ENST00000612369 LARGE2Q8N3Y3 721 aa23.38■■□□□ 1.33
VCX3A-203ENST00000612369 ZNF428Q96B54 188 aa23.38■■□□□ 1.33
VCX3A-203ENST00000612369 RTFDC1Q9BY42 306 aaPredicted RBP23.38■■□□□ 1.33
VCX3A-203ENST00000612369 CWC25Q9NXE8 425 aaPredicted RBP23.38■■□□□ 1.33
VCX3A-203ENST00000612369 MAP3K2Q9Y2U5 619 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms