RNA–Protein interactions for RNA: ENST00000611833.4

NEK3-206, Transcript of NIMA related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene NEK3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-206ENST00000611833 EPHA10Q5JZY3 1008 aa20.71■□□□□ 0.91
NEK3-206ENST00000611833 JAKMIP1Q96N16 626 aaKnown RBP20.71■□□□□ 0.91
NEK3-206ENST00000611833 TLR7Q9NYK1 1049 aaKnown RBP20.71■□□□□ 0.91
NEK3-206ENST00000611833 USP48Q86UV5 1035 aa20.7■□□□□ 0.9
NEK3-206ENST00000611833 SMC3Q9UQE7 1217 aa20.7■□□□□ 0.9
NEK3-206ENST00000611833 RPAP1Q9BWH6 1393 aaPredicted RBP20.7■□□□□ 0.9
NEK3-206ENST00000611833 SNRPA1P09661 255 aaKnown RBP20.7■□□□□ 0.9
NEK3-206ENST00000611833 ANKRD13DQ6ZTN6 518 aa20.7■□□□□ 0.9
NEK3-206ENST00000611833 PKD1L3Q7Z443 1732 aa20.7■□□□□ 0.9
NEK3-206ENST00000611833 TTC5Q8N0Z6 440 aa20.7■□□□□ 0.9
NEK3-206ENST00000611833 PDRG1Q9NUG6 133 aa20.7■□□□□ 0.9
NEK3-206ENST00000611833 HIP1O00291 1037 aa20.69■□□□□ 0.9
NEK3-206ENST00000611833 KCNJ4P48050 445 aa20.69■□□□□ 0.9
NEK3-206ENST00000611833 ZSCAN30Q86W11 494 aa20.69■□□□□ 0.9
NEK3-206ENST00000611833 ZKSCAN1P17029 563 aaPredicted RBP20.69■□□□□ 0.9
NEK3-206ENST00000611833 CYP46A1Q9Y6A2 500 aa20.69■□□□□ 0.9
NEK3-206ENST00000611833 GADD45BO75293 160 aaPredicted RBP20.68■□□□□ 0.9
NEK3-206ENST00000611833 ZSCAN22P10073 491 aaPredicted RBP20.68■□□□□ 0.9
NEK3-206ENST00000611833 ADCK5Q3MIX3 580 aa20.68■□□□□ 0.9
NEK3-206ENST00000611833 VPS53Q5VIR6 699 aa20.68■□□□□ 0.9
NEK3-206ENST00000611833 CADPS2Q86UW7 1296 aa20.68■□□□□ 0.9
NEK3-206ENST00000611833 CCDC171Q6TFL3 1326 aa20.68■□□□□ 0.9
NEK3-206ENST00000611833 STX6O43752 255 aa20.67■□□□□ 0.9
NEK3-206ENST00000611833 FMNL2Q96PY5 1086 aa20.67■□□□□ 0.9
NEK3-206ENST00000611833 PLEKHG2Q9H7P9 1386 aa20.67■□□□□ 0.9
NEK3-206ENST00000611833 SPATA31A3Q5VYP0 1347 aa20.67■□□□□ 0.9
NEK3-206ENST00000611833 SYT1P21579 422 aa20.67■□□□□ 0.9
NEK3-206ENST00000611833 MSNP26038 577 aaKnown RBP20.67■□□□□ 0.9
NEK3-206ENST00000611833 FAM227BQ96M60 508 aa20.67■□□□□ 0.9
NEK3-206ENST00000611833 TM6SF1Q9BZW5 370 aa20.67■□□□□ 0.9
NEK3-206ENST00000611833 ZSWIM6Q9HCJ5 1215 aa20.67■□□□□ 0.9
NEK3-206ENST00000611833 NMIQ13287 307 aaPredicted RBP20.66■□□□□ 0.9
NEK3-206ENST00000611833 JARID2Q92833 1246 aaPredicted RBP20.66■□□□□ 0.9
NEK3-206ENST00000611833 KCNB2Q92953 911 aa20.66■□□□□ 0.9
NEK3-206ENST00000611833 BOLA2Q9H3K6 86 aa20.66■□□□□ 0.9
NEK3-206ENST00000611833 PHF14O94880 888 aa20.66■□□□□ 0.9
NEK3-206ENST00000611833 NECTIN1Q15223 517 aa20.66■□□□□ 0.9
NEK3-206ENST00000611833 CCDC83Q8IWF9 413 aa20.66■□□□□ 0.9
NEK3-206ENST00000611833 ZSCAN31Q96LW9 406 aaPredicted RBP20.66■□□□□ 0.9
NEK3-206ENST00000611833 TSPY26PQ9H489 355 aa20.66■□□□□ 0.9
NEK3-206ENST00000611833 RBM8AQ9Y5S9 174 aaKnown RBP20.66■□□□□ 0.9
NEK3-206ENST00000611833 LARGE1O95461 756 aa20.65■□□□□ 0.9
NEK3-206ENST00000611833 RNF214Q8ND24 703 aa20.65■□□□□ 0.9
NEK3-206ENST00000611833 PDLIM2Q96JY6 352 aa20.65■□□□□ 0.9
NEK3-206ENST00000611833 FSD1Q9BTV5 496 aa20.65■□□□□ 0.9
NEK3-206ENST00000611833 GLI3P10071 1580 aa20.65■□□□□ 0.9
NEK3-206ENST00000611833 HS1BP3Q53T59 392 aa20.65■□□□□ 0.9
NEK3-206ENST00000611833 CNPY2Q9Y2B0 182 aa20.65■□□□□ 0.9
NEK3-206ENST00000611833 AFDNP55196 1824 aaKnown RBP20.65■□□□□ 0.9
NEK3-206ENST00000611833 CPDO75976 1380 aa20.65■□□□□ 0.9
NEK3-206ENST00000611833 CABP4P57796 275 aa20.64■□□□□ 0.89
NEK3-206ENST00000611833 CREB3L3Q68CJ9 461 aa20.64■□□□□ 0.89
NEK3-206ENST00000611833 SH2B1Q9NRF2 756 aaPredicted RBP20.64■□□□□ 0.89
NEK3-206ENST00000611833 ATP6V1DQ9Y5K8 247 aa20.64■□□□□ 0.89
NEK3-206ENST00000611833 ARFGEF2Q9Y6D5 1785 aa20.64■□□□□ 0.89
NEK3-206ENST00000611833 TMEM87AQ8NBN3 555 aa20.64■□□□□ 0.89
NEK3-206ENST00000611833 DDX54Q8TDD1 881 aaKnown RBP20.64■□□□□ 0.89
NEK3-206ENST00000611833 COPRSQ9NQ92 184 aa20.64■□□□□ 0.89
NEK3-206ENST00000611833 F13A1P00488 732 aa20.63■□□□□ 0.89
NEK3-206ENST00000611833 GJB2P29033 226 aa20.63■□□□□ 0.89
NEK3-206ENST00000611833 RFX5P48382 616 aaPredicted RBP20.63■□□□□ 0.89
NEK3-206ENST00000611833 MAP4K1Q92918 833 aa20.63■□□□□ 0.89
NEK3-206ENST00000611833 A0A0D9SFI3 127 aa20.62■□□□□ 0.89
NEK3-206ENST00000611833 UBE3BQ7Z3V4 1068 aa20.62■□□□□ 0.89
NEK3-206ENST00000611833 SNRKQ9NRH2 765 aa20.62■□□□□ 0.89
NEK3-206ENST00000611833 ATP5J2-PTCD1G3V325 749 aa20.62■□□□□ 0.89
NEK3-206ENST00000611833 PTCD1O75127 700 aaKnown RBP20.62■□□□□ 0.89
NEK3-206ENST00000611833 PSMA5P28066 241 aa20.62■□□□□ 0.89
NEK3-206ENST00000611833 PTPN12Q05209 780 aaKnown RBP20.62■□□□□ 0.89
NEK3-206ENST00000611833 TPRNQ4KMQ1 711 aa20.61■□□□□ 0.89
NEK3-206ENST00000611833 PARP4Q9UKK3 1724 aaKnown RBP20.61■□□□□ 0.89
NEK3-206ENST00000611833 LAMB4A4D0S4 1761 aa20.61■□□□□ 0.89
NEK3-206ENST00000611833 TCHHQ07283 1943 aa20.61■□□□□ 0.89
NEK3-206ENST00000611833 RABL6Q3YEC7 729 aaPredicted RBP20.61■□□□□ 0.89
NEK3-206ENST00000611833 RNF20Q5VTR2 975 aa20.61■□□□□ 0.89
NEK3-206ENST00000611833 SLC27A2O14975 620 aa20.6■□□□□ 0.89
NEK3-206ENST00000611833 A0A087WZG4 1122 aa20.6■□□□□ 0.89
NEK3-206ENST00000611833 ME3Q16798 604 aa20.6■□□□□ 0.89
NEK3-206ENST00000611833 COL15A1P39059 1388 aa20.59■□□□□ 0.89
NEK3-206ENST00000611833 EDC3Q96F86 508 aaKnown RBP20.59■□□□□ 0.89
NEK3-206ENST00000611833 DBNLQ9UJU6 430 aaKnown RBP20.59■□□□□ 0.89
NEK3-206ENST00000611833 MED23Q9ULK4 1368 aa20.59■□□□□ 0.89
NEK3-206ENST00000611833 FIBPO43427 364 aa20.59■□□□□ 0.89
NEK3-206ENST00000611833 CASP7P55210 303 aa20.59■□□□□ 0.89
NEK3-206ENST00000611833 UBE2HP62256 183 aa20.59■□□□□ 0.89
NEK3-206ENST00000611833 TFCP2Q12800 502 aa20.59■□□□□ 0.89
NEK3-206ENST00000611833 PLBD2Q8NHP8 589 aa20.59■□□□□ 0.89
NEK3-206ENST00000611833 DTNBO60941 627 aa20.58■□□□□ 0.89
NEK3-206ENST00000611833 COL9A3Q14050 684 aaPredicted RBP20.58■□□□□ 0.89
NEK3-206ENST00000611833 TNNI3KQ59H18 835 aa20.58■□□□□ 0.89
NEK3-206ENST00000611833 CCDC183Q5T5S1 534 aa20.58■□□□□ 0.89
NEK3-206ENST00000611833 NECAB1Q8N987 351 aa20.58■□□□□ 0.89
NEK3-206ENST00000611833 NOL7Q9UMY1 257 aaKnown RBP20.58■□□□□ 0.89
NEK3-206ENST00000611833 FPGT-TNNI3KV9GXZ4 949 aa20.58■□□□□ 0.89
NEK3-206ENST00000611833 NBPF26B4DH59 902 aa20.58■□□□□ 0.88
NEK3-206ENST00000611833 ST3GAL1Q11201 340 aa20.58■□□□□ 0.88
NEK3-206ENST00000611833 CSPP1Q1MSJ5 1256 aa20.58■□□□□ 0.88
NEK3-206ENST00000611833 NBPF14Q5TI25 921 aa20.58■□□□□ 0.88
NEK3-206ENST00000611833 NBPF10Q6P3W6 841 aaKnown RBP20.58■□□□□ 0.88
NEK3-206ENST00000611833 NBPF15Q8N660 670 aa20.58■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms