RNA–Protein interactions for RNA: ENST00000611725.4

SNX13-213, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 6,817 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-213ENST00000611725 CPS1P31327 1500 aa7.54□□□□□ -1.2
SNX13-213ENST00000611725 USP48Q86UV5 1035 aa7.54□□□□□ -1.2
SNX13-213ENST00000611725 CHAMP1Q96JM3 812 aa7.54□□□□□ -1.2
SNX13-213ENST00000611725 DBNDD2Q9BQY9 259 aa7.54□□□□□ -1.2
SNX13-213ENST00000611725 TM6SF1Q9BZW5 370 aa7.54□□□□□ -1.2
SNX13-213ENST00000611725 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.54□□□□□ -1.29e-7■■■□□ 17.8
SNX13-213ENST00000611725 CRB1P82279 1406 aa7.54□□□□□ -1.2
SNX13-213ENST00000611725 PTPRUQ92729 1446 aa7.54□□□□□ -1.2
SNX13-213ENST00000611725 HCLS1P14317 486 aaPredicted RBP7.54□□□□□ -1.2
SNX13-213ENST00000611725 ZNF445P59923 1031 aa7.54□□□□□ -1.2
SNX13-213ENST00000611725 TNMDQ9H2S6 317 aa7.54□□□□□ -1.2
SNX13-213ENST00000611725 TFIP11Q9UBB9 837 aaKnown RBP7.54□□□□□ -1.2
SNX13-213ENST00000611725 CFAP45Q9UL16 551 aa7.54□□□□□ -1.2
SNX13-213ENST00000611725 FAM177BA6PVY3 158 aa7.54□□□□□ -1.2
SNX13-213ENST00000611725 HMGB1P09429 215 aaKnown RBP7.54□□□□□ -1.2
SNX13-213ENST00000611725 IFIT5Q13325 482 aaKnown RBP7.54□□□□□ -1.2
SNX13-213ENST00000611725 POLA2Q14181 598 aa7.54□□□□□ -1.2
SNX13-213ENST00000611725 STK38Q15208 465 aa7.54□□□□□ -1.2
SNX13-213ENST00000611725 VPS53Q5VIR6 699 aa7.54□□□□□ -1.2
SNX13-213ENST00000611725 CREB3L3Q68CJ9 461 aa7.54□□□□□ -1.2
SNX13-213ENST00000611725 FAM13BQ9NYF5 915 aa7.54□□□□□ -1.2
SNX13-213ENST00000611725 NCOA3Q9Y6Q9 1424 aa7.54□□□□□ -1.2
SNX13-213ENST00000611725 MAP3K11Q16584 847 aa7.54□□□□□ -1.2
SNX13-213ENST00000611725 TTC39AQ5SRH9 613 aa7.54□□□□□ -1.2
SNX13-213ENST00000611725 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.54□□□□□ -1.23e-7■□□□□ 8.9
SNX13-213ENST00000611725 AKAP2Q9Y2D5 859 aa7.54□□□□□ -1.2
SNX13-213ENST00000611725 CFAP65Q6ZU64 1925 aaKnown RBP7.54□□□□□ -1.2
SNX13-213ENST00000611725 HMGN5P82970 282 aaKnown RBP7.54□□□□□ -1.2
SNX13-213ENST00000611725 CUL4AQ13619 759 aa7.54□□□□□ -1.2
SNX13-213ENST00000611725 CNPY2Q9Y2B0 182 aa7.54□□□□□ -1.2
SNX13-213ENST00000611725 ME1P48163 572 aa7.53□□□□□ -1.2
SNX13-213ENST00000611725 FAM227BQ96M60 508 aa7.53□□□□□ -1.2
SNX13-213ENST00000611725 IDH1O75874 414 aaKnown RBP7.53□□□□□ -1.2
SNX13-213ENST00000611725 TPM3P06753 285 aa7.53□□□□□ -1.2
SNX13-213ENST00000611725 TPM4P67936 248 aa7.53□□□□□ -1.2
SNX13-213ENST00000611725 TRIM29Q14134 588 aa7.53□□□□□ -1.2
SNX13-213ENST00000611725 NFXL1Q6ZNB6 911 aa7.53□□□□□ -1.2
SNX13-213ENST00000611725 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.53□□□□□ -1.2
SNX13-213ENST00000611725 PRAMEF22A3QJZ6 481 aa7.53□□□□□ -1.2
SNX13-213ENST00000611725 HS1BP3Q53T59 392 aa7.53□□□□□ -1.2
SNX13-213ENST00000611725 ZNF396Q96N95 335 aaPredicted RBP7.53□□□□□ -1.2
SNX13-213ENST00000611725 PHKG2P15735 406 aa7.53□□□□□ -1.2
SNX13-213ENST00000611725 DNM1Q05193 864 aaKnown RBP7.53□□□□□ -1.2
SNX13-213ENST00000611725 LDHAL6AQ6ZMR3 332 aa7.53□□□□□ -1.2
SNX13-213ENST00000611725 TEX13AQ9BXU3 409 aaPredicted RBP7.53□□□□□ -1.2
SNX13-213ENST00000611725 TMEM63CQ9P1W3 806 aa7.53□□□□□ -1.2
SNX13-213ENST00000611725 KIF1BO60333 1816 aa7.53□□□□□ -1.2
SNX13-213ENST00000611725 TFCP2Q12800 502 aa7.53□□□□□ -1.2
SNX13-213ENST00000611725 METTL24Q5JXM2 366 aa7.53□□□□□ -1.2
SNX13-213ENST00000611725 COPRSQ9NQ92 184 aa7.53□□□□□ -1.2
SNX13-213ENST00000611725 KIAA1210Q9ULL0 1709 aa7.53□□□□□ -1.2
SNX13-213ENST00000611725 PIK3C2BO00750 1634 aa7.52□□□□□ -1.21
SNX13-213ENST00000611725 IMMTQ16891 758 aaKnown RBP7.52□□□□□ -1.21
SNX13-213ENST00000611725 RBSNQ9H1K0 784 aa7.52□□□□□ -1.21
SNX13-213ENST00000611725 AXIN2Q9Y2T1 843 aa7.52□□□□□ -1.21
SNX13-213ENST00000611725 NEURL1BA8MQ27 555 aa7.52□□□□□ -1.21
SNX13-213ENST00000611725 EYA2O00167 538 aa7.52□□□□□ -1.21
SNX13-213ENST00000611725 GPTP24298 496 aa7.52□□□□□ -1.21
SNX13-213ENST00000611725 ZSCAN25Q6NSZ9 544 aa7.52□□□□□ -1.21
SNX13-213ENST00000611725 PLBD2Q8NHP8 589 aa7.52□□□□□ -1.21
SNX13-213ENST00000611725 IL2RBP14784 551 aa7.52□□□□□ -1.21
SNX13-213ENST00000611725 MCM5P33992 734 aa7.52□□□□□ -1.21
SNX13-213ENST00000611725 CAMK4Q16566 473 aa7.52□□□□□ -1.21
SNX13-213ENST00000611725 MCMDC2Q4G0Z9 681 aa7.52□□□□□ -1.21
SNX13-213ENST00000611725 TNNI3KQ59H18 835 aa7.52□□□□□ -1.21
SNX13-213ENST00000611725 CKAP2LQ8IYA6 745 aa7.52□□□□□ -1.21
SNX13-213ENST00000611725 ARID3AQ99856 593 aa7.52□□□□□ -1.21
SNX13-213ENST00000611725 DDX19AQ9NUU7 478 aaKnown RBP7.52□□□□□ -1.21
SNX13-213ENST00000611725 TRMT112Q9UI30 125 aaKnown RBP7.52□□□□□ -1.21
SNX13-213ENST00000611725 FPGT-TNNI3KV9GXZ4 949 aa7.52□□□□□ -1.21
SNX13-213ENST00000611725 TMEM94Q12767 1356 aa7.52□□□□□ -1.21
SNX13-213ENST00000611725 DTNBO60941 627 aa7.52□□□□□ -1.21
SNX13-213ENST00000611725 MPHOSPH8Q99549 860 aa7.52□□□□□ -1.21
SNX13-213ENST00000611725 LRRC2Q9BYS8 371 aa7.52□□□□□ -1.21
SNX13-213ENST00000611725 TIMM10P62072 90 aa7.51□□□□□ -1.21
SNX13-213ENST00000611725 AKAP17AQ02040 695 aaKnown RBP7.51□□□□□ -1.21
SNX13-213ENST00000611725 SAFBQ15424 915 aaKnown RBP eCLIP7.51□□□□□ -1.21
SNX13-213ENST00000611725 EDC3Q96F86 508 aaKnown RBP7.51□□□□□ -1.21
SNX13-213ENST00000611725 PTH1RQ03431 593 aa7.51□□□□□ -1.21
SNX13-213ENST00000611725 FAM173BQ6P4H8 233 aa7.51□□□□□ -1.21
SNX13-213ENST00000611725 PI4K2BQ8TCG2 481 aa7.51□□□□□ -1.21
SNX13-213ENST00000611725 DDX17Q92841 729 aaKnown RBP7.51□□□□□ -1.21
SNX13-213ENST00000611725 LSG1Q9H089 658 aaKnown RBP7.51□□□□□ -1.21
SNX13-213ENST00000611725 RRP9O43818 475 aaKnown RBP7.51□□□□□ -1.21
SNX13-213ENST00000611725 PPFIA3O75145 1194 aa7.51□□□□□ -1.21
SNX13-213ENST00000611725 TPM2P07951 284 aa7.51□□□□□ -1.21
SNX13-213ENST00000611725 RUFY3Q7L099 469 aa7.51□□□□□ -1.21
SNX13-213ENST00000611725 ZKSCAN5Q9Y2L8 839 aa7.51□□□□□ -1.21
SNX13-213ENST00000611725 HSP90AB3PQ58FF7 597 aa7.51□□□□□ -1.21
SNX13-213ENST00000611725 GIMAP6Q6P9H5 292 aa7.51□□□□□ -1.21
SNX13-213ENST00000611725 CEP57L1Q8IYX8 460 aa7.51□□□□□ -1.21
SNX13-213ENST00000611725 SART3Q15020 963 aaKnown RBP7.51□□□□□ -1.21
SNX13-213ENST00000611725 ATP5JP18859 108 aa7.5□□□□□ -1.21
SNX13-213ENST00000611725 JMYQ8N9B5 988 aa7.5□□□□□ -1.21
SNX13-213ENST00000611725 A1BGP04217 495 aa7.5□□□□□ -1.21
SNX13-213ENST00000611725 UVSSAQ2YD98 709 aa7.5□□□□□ -1.21
SNX13-213ENST00000611725 VPS37DQ86XT2 251 aa7.5□□□□□ -1.21
SNX13-213ENST00000611725 KBTBD3Q8NAB2 608 aa7.5□□□□□ -1.21
SNX13-213ENST00000611725 MAP4K1Q92918 833 aa7.5□□□□□ -1.21
SNX13-213ENST00000611725 PPP1R9BQ96SB3 815 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms