RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 KIF21BO75037 1637 aa8.15□□□□□ -1.1
LINC00540-201ENST00000611481 GLI2P10070 1586 aa8.15□□□□□ -1.1
LINC00540-201ENST00000611481 EML1O00423 815 aa8.15□□□□□ -1.1
LINC00540-201ENST00000611481 NFATC2IPQ8NCF5 419 aa8.15□□□□□ -1.1
LINC00540-201ENST00000611481 PSMG3-AS1Q96PY0 264 aa8.15□□□□□ -1.1
LINC00540-201ENST00000611481 PRDM6Q9NQX0 595 aa8.15□□□□□ -1.1
LINC00540-201ENST00000611481 M0R082 166 aa8.14□□□□□ -1.11
LINC00540-201ENST00000611481 NEUROD1Q13562 356 aa8.14□□□□□ -1.11
LINC00540-201ENST00000611481 RSPO4Q2I0M5 234 aaPredicted RBP8.14□□□□□ -1.11
LINC00540-201ENST00000611481 SLC9A9Q8IVB4 645 aa8.14□□□□□ -1.11
LINC00540-201ENST00000611481 ZNF417Q8TAU3 575 aa8.14□□□□□ -1.11
LINC00540-201ENST00000611481 ZNF587Q96SQ5 575 aaPredicted RBP8.14□□□□□ -1.11
LINC00540-201ENST00000611481 ADAMTS12P58397 1594 aa8.14□□□□□ -1.11
LINC00540-201ENST00000611481 TEX14Q8IWB6 1497 aa8.13□□□□□ -1.11
LINC00540-201ENST00000611481 EPHA4P54764 986 aa8.13□□□□□ -1.11
LINC00540-201ENST00000611481 TRIM28Q13263 835 aaKnown RBP8.13□□□□□ -1.11
LINC00540-201ENST00000611481 NKAPLQ5M9Q1 402 aa8.13□□□□□ -1.11
LINC00540-201ENST00000611481 C7orf43Q8WVR3 580 aa8.13□□□□□ -1.11
LINC00540-201ENST00000611481 TNFRSF25Q93038 417 aa8.13□□□□□ -1.11
LINC00540-201ENST00000611481 NACC1Q96RE7 527 aa8.13□□□□□ -1.11
LINC00540-201ENST00000611481 ABCA5Q8WWZ7 1642 aa8.13□□□□□ -1.11
LINC00540-201ENST00000611481 ASXL2Q76L83 1435 aa8.12□□□□□ -1.11
LINC00540-201ENST00000611481 SERTM1A2A2V5 107 aa8.12□□□□□ -1.11
LINC00540-201ENST00000611481 SFSWAPQ12872 951 aaKnown RBP8.12□□□□□ -1.11
LINC00540-201ENST00000611481 NCOA4Q13772 614 aa8.12□□□□□ -1.11
LINC00540-201ENST00000611481 MCM6Q14566 821 aa8.12□□□□□ -1.11
LINC00540-201ENST00000611481 SLC30A3Q99726 388 aa8.12□□□□□ -1.11
LINC00540-201ENST00000611481 ALG2Q9H553 416 aa8.12□□□□□ -1.11
LINC00540-201ENST00000611481 TPSG1Q9NRR2 321 aa8.12□□□□□ -1.11
LINC00540-201ENST00000611481 STARD13Q9Y3M8 1113 aa8.12□□□□□ -1.11
LINC00540-201ENST00000611481 SPEM2Q0P670 501 aa8.11□□□□□ -1.11
LINC00540-201ENST00000611481 COL9A3Q14050 684 aaPredicted RBP8.11□□□□□ -1.11
LINC00540-201ENST00000611481 TBCELQ5QJ74 424 aa8.11□□□□□ -1.11
LINC00540-201ENST00000611481 TNS4Q8IZW8 715 aa8.11□□□□□ -1.11
LINC00540-201ENST00000611481 MICALL1Q8N3F8 863 aa8.11□□□□□ -1.11
LINC00540-201ENST00000611481 RHPN1Q8TCX5 695 aa8.11□□□□□ -1.11
LINC00540-201ENST00000611481 CUX1P39880 1505 aa8.11□□□□□ -1.11
LINC00540-201ENST00000611481 PLB1Q6P1J6 1458 aa8.11□□□□□ -1.11
LINC00540-201ENST00000611481 SCO2A0A1W2PP80 73 aa8.1□□□□□ -1.11
LINC00540-201ENST00000611481 FAM229AH3BQW9 127 aa8.1□□□□□ -1.11
LINC00540-201ENST00000611481 ALBP02768 609 aa8.1□□□□□ -1.11
LINC00540-201ENST00000611481 ADH7P40394 386 aa8.1□□□□□ -1.11
LINC00540-201ENST00000611481 TRIM50Q86XT4 487 aa8.1□□□□□ -1.11
LINC00540-201ENST00000611481 WWC1Q8IX03 1113 aa8.1□□□□□ -1.11
LINC00540-201ENST00000611481 ANKIB1Q9P2G1 1089 aa8.1□□□□□ -1.11
LINC00540-201ENST00000611481 ADAMTSL3P82987 1691 aa8.1□□□□□ -1.11
LINC00540-201ENST00000611481 USP17L5A8MUK1 530 aa8.09□□□□□ -1.11
LINC00540-201ENST00000611481 DYRK3O43781 588 aa8.09□□□□□ -1.11
LINC00540-201ENST00000611481 C1orf53Q5VUE5 145 aa8.09□□□□□ -1.11
LINC00540-201ENST00000611481 COG6Q9Y2V7 657 aa8.09□□□□□ -1.11
LINC00540-201ENST00000611481 FHAD1B1AJZ9 1412 aa8.09□□□□□ -1.11
LINC00540-201ENST00000611481 TTBK1Q5TCY1 1321 aaPredicted RBP8.08□□□□□ -1.12
LINC00540-201ENST00000611481 MAP3K4Q9Y6R4 1608 aa8.08□□□□□ -1.12
LINC00540-201ENST00000611481 NID1P14543 1247 aa8.08□□□□□ -1.12
LINC00540-201ENST00000611481 SH3PXD2AQ5TCZ1 1133 aa8.08□□□□□ -1.12
LINC00540-201ENST00000611481 C8orf86Q6ZUL3 223 aa8.08□□□□□ -1.12
LINC00540-201ENST00000611481 DEPDC4Q8N2C3 294 aa8.08□□□□□ -1.12
LINC00540-201ENST00000611481 CEP63Q96MT8 703 aa8.08□□□□□ -1.12
LINC00540-201ENST00000611481 BRD7Q9NPI1 651 aa8.08□□□□□ -1.12
LINC00540-201ENST00000611481 CHMP3Q9Y3E7 222 aa8.08□□□□□ -1.12
LINC00540-201ENST00000611481 ABCA10Q8WWZ4 1543 aa8.08□□□□□ -1.12
LINC00540-201ENST00000611481 KCNQ4P56696 695 aa8.07□□□□□ -1.12
LINC00540-201ENST00000611481 PSMA6P60900 246 aaKnown RBP8.07□□□□□ -1.12
LINC00540-201ENST00000611481 TPCN2Q8NHX9 752 aa8.07□□□□□ -1.12
LINC00540-201ENST00000611481 KCNH4Q9UQ05 1017 aa8.07□□□□□ -1.12
LINC00540-201ENST00000611481 ATP1A2P50993 1020 aa8.06□□□□□ -1.12
LINC00540-201ENST00000611481 HIRAP54198 1017 aaPredicted RBP8.06□□□□□ -1.12
LINC00540-201ENST00000611481 GRIK4Q16099 956 aa8.06□□□□□ -1.12
LINC00540-201ENST00000611481 FOXD4L6Q3SYB3 417 aaPredicted RBP8.06□□□□□ -1.12
LINC00540-201ENST00000611481 TRAPPC3LQ5T215 181 aa8.06□□□□□ -1.12
LINC00540-201ENST00000611481 FOXD4L3Q6VB84 417 aaPredicted RBP8.06□□□□□ -1.12
LINC00540-201ENST00000611481 C20orf204Q6ZNR8 217 aa8.06□□□□□ -1.12
LINC00540-201ENST00000611481 RAB44Q7Z6P3 723 aaPredicted RBP8.06□□□□□ -1.12
LINC00540-201ENST00000611481 EPRSP07814 1512 aaKnown RBP8.06□□□□□ -1.12
LINC00540-201ENST00000611481 ABCC2Q92887 1545 aa8.06□□□□□ -1.12
LINC00540-201ENST00000611481 MADDQ8WXG6 1647 aa8.05□□□□□ -1.12
LINC00540-201ENST00000611481 SFI1A8K8P3 1242 aa8.05□□□□□ -1.12
LINC00540-201ENST00000611481 C9orf172C9J069 976 aa8.05□□□□□ -1.12
LINC00540-201ENST00000611481 LILRB5O75023 590 aa8.05□□□□□ -1.12
LINC00540-201ENST00000611481 CCDC102BQ68D86 513 aa8.05□□□□□ -1.12
LINC00540-201ENST00000611481 HSH2DQ96JZ2 352 aa8.05□□□□□ -1.12
LINC00540-201ENST00000611481 HCN4Q9Y3Q4 1203 aa8.05□□□□□ -1.12
LINC00540-201ENST00000611481 RUSC2Q8N2Y8 1516 aa8.04□□□□□ -1.12
LINC00540-201ENST00000611481 ZBTB7BO15156 539 aaPredicted RBP8.04□□□□□ -1.12
LINC00540-201ENST00000611481 TYRO3Q06418 890 aa8.04□□□□□ -1.12
LINC00540-201ENST00000611481 TPRNQ4KMQ1 711 aa8.04□□□□□ -1.12
LINC00540-201ENST00000611481 ARTNQ5T4W7 220 aa8.04□□□□□ -1.12
LINC00540-201ENST00000611481 POTEAQ6S8J7 498 aa8.04□□□□□ -1.12
LINC00540-201ENST00000611481 KRTAP9-2Q9BYQ4 174 aa8.04□□□□□ -1.12
LINC00540-201ENST00000611481 PHACTR1Q9C0D0 580 aa8.04□□□□□ -1.12
LINC00540-201ENST00000611481 TSPAN10Q9H1Z9 355 aaPredicted RBP8.04□□□□□ -1.12
LINC00540-201ENST00000611481 ZFP64Q9NPA5 681 aa8.04□□□□□ -1.12
LINC00540-201ENST00000611481 MED1Q15648 1581 aaPredicted RBP8.03□□□□□ -1.12
LINC00540-201ENST00000611481 PRSS36Q5K4E3 855 aa8.03□□□□□ -1.12
LINC00540-201ENST00000611481 PLEKHM2Q8IWE5 1019 aa8.03□□□□□ -1.12
LINC00540-201ENST00000611481 BHMTQ93088 406 aa8.03□□□□□ -1.12
LINC00540-201ENST00000611481 SUSD3Q96L08 255 aa8.03□□□□□ -1.12
LINC00540-201ENST00000611481 KIAA0586Q9BVV6 1533 aa8.03□□□□□ -1.12
LINC00540-201ENST00000611481 ARID4BQ4LE39 1312 aaPredicted RBP8.03□□□□□ -1.12
LINC00540-201ENST00000611481 CUL7Q14999 1698 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 993 ms