RNA–Protein interactions for RNA: ENST00000610733.1

TPM1-233, Transcript of tropomyosin 1, human

TSL 2 BASIC

Gene TPM1, Length 3,957 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-233	ENST00000610733	IDH1	O75874	414 aa	Known RBP	11.25	□□□□□ -0.61
TPM1-233	ENST00000610733	SKIL	P12757	684 aa		11.25	□□□□□ -0.61
TPM1-233	ENST00000610733	TRDN	Q13061	729 aa		11.25	□□□□□ -0.61
TPM1-233	ENST00000610733	ARID5B	Q14865	1188 aa		11.25	□□□□□ -0.61
TPM1-233	ENST00000610733	TMC6	Q7Z403	805 aa		11.25	□□□□□ -0.61
TPM1-233	ENST00000610733	ERC1	Q8IUD2	1116 aa		11.25	□□□□□ -0.61
TPM1-233	ENST00000610733	CPLX3	Q8WVH0	158 aa		11.25	□□□□□ -0.61
TPM1-233	ENST00000610733	EVI5L	Q96CN4	794 aa		11.25	□□□□□ -0.61
TPM1-233	ENST00000610733		E9PCH4	1651 aa		11.25	□□□□□ -0.61
TPM1-233	ENST00000610733	NR1I2	O75469	434 aa		11.25	□□□□□ -0.61
TPM1-233	ENST00000610733	CFAP100	Q494V2	611 aa		11.25	□□□□□ -0.61
TPM1-233	ENST00000610733	KLHL10	Q6JEL2	608 aa		11.25	□□□□□ -0.61
TPM1-233	ENST00000610733	NEK1	Q96PY6	1258 aa		11.25	□□□□□ -0.61
TPM1-233	ENST00000610733	SCAND2P	Q9GZW5	306 aa	Predicted RBP	11.25	□□□□□ -0.61
TPM1-233	ENST00000610733	PIK3R4	Q99570	1358 aa		11.24	□□□□□ -0.61
TPM1-233	ENST00000610733	ANAPC15	P60006	121 aa		11.24	□□□□□ -0.61
TPM1-233	ENST00000610733	SLC4A8	Q2Y0W8	1093 aa		11.24	□□□□□ -0.61
TPM1-233	ENST00000610733	NFATC2IP	Q8NCF5	419 aa		11.24	□□□□□ -0.61
TPM1-233	ENST00000610733	PRDM4	Q9UKN5	801 aa		11.24	□□□□□ -0.61
TPM1-233	ENST00000610733	NBPF6	Q5VWK0	638 aa		11.24	□□□□□ -0.61
TPM1-233	ENST00000610733	DDX17	Q92841	729 aa	Known RBP	11.24	□□□□□ -0.61
TPM1-233	ENST00000610733	NBPF4	Q96M43	638 aa		11.24	□□□□□ -0.61
TPM1-233	ENST00000610733	CBX8	Q9HC52	389 aa		11.24	□□□□□ -0.61
TPM1-233	ENST00000610733	RAD50	Q92878	1312 aa		11.24	□□□□□ -0.61
TPM1-233	ENST00000610733	IQGAP3	Q86VI3	1631 aa		11.24	□□□□□ -0.61
TPM1-233	ENST00000610733	GPT	P24298	496 aa		11.24	□□□□□ -0.61
TPM1-233	ENST00000610733	EAF2	Q96CJ1	260 aa	Predicted RBP	11.24	□□□□□ -0.61
TPM1-233	ENST00000610733	INTS4	Q96HW7	963 aa	Known RBP	11.24	□□□□□ -0.61
TPM1-233	ENST00000610733	SH2B1	Q9NRF2	756 aa	Predicted RBP	11.24	□□□□□ -0.61
TPM1-233	ENST00000610733	URI1	O94763	535 aa	Predicted RBP	11.23	□□□□□ -0.61
TPM1-233	ENST00000610733	KCNA6	P17658	529 aa		11.23	□□□□□ -0.61
TPM1-233	ENST00000610733	HOXC9	P31274	260 aa		11.23	□□□□□ -0.61
TPM1-233	ENST00000610733	DDIT3	P35638	169 aa		11.23	□□□□□ -0.61
TPM1-233	ENST00000610733	TFCP2	Q12800	502 aa		11.23	□□□□□ -0.61
TPM1-233	ENST00000610733	MTMR6	Q9Y217	621 aa		11.23	□□□□□ -0.61
TPM1-233	ENST00000610733	CCDC171	Q6TFL3	1326 aa		11.23	□□□□□ -0.61
TPM1-233	ENST00000610733	GRM8	O00222	908 aa		11.23	□□□□□ -0.61
TPM1-233	ENST00000610733	LTK	P29376	864 aa		11.23	□□□□□ -0.61
TPM1-233	ENST00000610733	CEP57L1	Q8IYX8	460 aa		11.23	□□□□□ -0.61
TPM1-233	ENST00000610733	NUP133	Q8WUM0	1156 aa		11.23	□□□□□ -0.61
TPM1-233	ENST00000610733	SUCLG2	Q96I99	432 aa		11.23	□□□□□ -0.61
TPM1-233	ENST00000610733	PHF8	Q9UPP1	1060 aa		11.23	□□□□□ -0.61
TPM1-233	ENST00000610733	ABCA6	Q8N139	1617 aa		11.23	□□□□□ -0.61
TPM1-233	ENST00000610733	MCM5	P33992	734 aa		11.23	□□□□□ -0.61
TPM1-233	ENST00000610733	ANKRD1	Q15327	319 aa		11.23	□□□□□ -0.61
TPM1-233	ENST00000610733	LMBR1L	Q6UX01	489 aa		11.23	□□□□□ -0.61
TPM1-233	ENST00000610733	ZNF594	Q96JF6	807 aa	Predicted RBP	11.23	□□□□□ -0.61
TPM1-233	ENST00000610733	DBNDD2	Q9BQY9	259 aa		11.23	□□□□□ -0.61
TPM1-233	ENST00000610733	SLC27A2	O14975	620 aa		11.22	□□□□□ -0.61
TPM1-233	ENST00000610733	ZNF500	O60304	480 aa	Predicted RBP	11.22	□□□□□ -0.61
TPM1-233	ENST00000610733	GTF2E1	P29083	439 aa	Predicted RBP	11.22	□□□□□ -0.61
TPM1-233	ENST00000610733	TRIM29	Q14134	588 aa		11.22	□□□□□ -0.61
TPM1-233	ENST00000610733	CEP135	Q66GS9	1140 aa		11.22	□□□□□ -0.61
TPM1-233	ENST00000610733	RNF216	Q9NWF9	866 aa	Predicted RBP	11.22	□□□□□ -0.61
TPM1-233	ENST00000610733	CFAP45	Q9UL16	551 aa		11.22	□□□□□ -0.61
TPM1-233	ENST00000610733	MICU3	Q86XE3	530 aa		11.22	□□□□□ -0.61
TPM1-233	ENST00000610733	TAF6L	Q9Y6J9	622 aa		11.22	□□□□□ -0.61
TPM1-233	ENST00000610733	CABP4	P57796	275 aa		11.22	□□□□□ -0.61
TPM1-233	ENST00000610733	IFIT1	P09914	478 aa	Known RBP	11.21	□□□□□ -0.61
TPM1-233	ENST00000610733	SPECC1	Q5M775	1068 aa		11.21	□□□□□ -0.61
TPM1-233	ENST00000610733	TTC39A	Q5SRH9	613 aa		11.21	□□□□□ -0.61
TPM1-233	ENST00000610733	ZNF589	Q86UQ0	364 aa	Predicted RBP	11.21	□□□□□ -0.61
TPM1-233	ENST00000610733	CCDC94	Q9BW85	323 aa	Predicted RBP	11.21	□□□□□ -0.61
TPM1-233	ENST00000610733	GOLGA8B	A8MQT2	603 aa		11.21	□□□□□ -0.61
TPM1-233	ENST00000610733	MYRIP	Q8NFW9	859 aa		11.21	□□□□□ -0.61
TPM1-233	ENST00000610733	GTF3C6	Q969F1	213 aa		11.21	□□□□□ -0.61
TPM1-233	ENST00000610733	PUS7	Q96PZ0	661 aa	Known RBP	11.21	□□□□□ -0.61
TPM1-233	ENST00000610733	ZFYVE9	O95405	1425 aa		11.21	□□□□□ -0.61
TPM1-233	ENST00000610733	HS1BP3	Q53T59	392 aa		11.21	□□□□□ -0.62
TPM1-233	ENST00000610733	NAT10	Q9H0A0	1025 aa	Known RBP	11.21	□□□□□ -0.62
TPM1-233	ENST00000610733	GJB4	Q9NTQ9	266 aa		11.21	□□□□□ -0.62
TPM1-233	ENST00000610733	HYPK	Q9NX55	129 aa		11.21	□□□□□ -0.62
TPM1-233	ENST00000610733	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	11.21	□□□□□ -0.62
TPM1-233	ENST00000610733	FAM135B	Q49AJ0	1406 aa		11.21	□□□□□ -0.62
TPM1-233	ENST00000610733	MAP3K4	Q9Y6R4	1608 aa		11.2	□□□□□ -0.62
TPM1-233	ENST00000610733	ZFYVE16	Q7Z3T8	1539 aa		11.2	□□□□□ -0.62
TPM1-233	ENST00000610733	HIP1	O00291	1037 aa		11.2	□□□□□ -0.62
TPM1-233	ENST00000610733	SFPQ	P23246	707 aa	Known RBP eCLIP	11.2	□□□□□ -0.62
TPM1-233	ENST00000610733	ANKRD24	Q8TF21	1146 aa		11.2	□□□□□ -0.62
TPM1-233	ENST00000610733	C8orf76	Q96K31	380 aa		11.2	□□□□□ -0.62
TPM1-233	ENST00000610733	LSG1	Q9H089	658 aa	Known RBP	11.2	□□□□□ -0.62
TPM1-233	ENST00000610733	LRRC7	Q96NW7	1537 aa		11.2	□□□□□ -0.62
TPM1-233	ENST00000610733	CCDC69	A6NI79	296 aa		11.2	□□□□□ -0.62
TPM1-233	ENST00000610733	GOLGA8F	Q08AF8	430 aa		11.2	□□□□□ -0.62
TPM1-233	ENST00000610733	GOLGA8DP	Q0D2H9	430 aa		11.2	□□□□□ -0.62
TPM1-233	ENST00000610733	LEO1	Q8WVC0	666 aa	Predicted RBP	11.2	□□□□□ -0.62
TPM1-233	ENST00000610733	PRIMPOL	Q96LW4	560 aa		11.2	□□□□□ -0.62
TPM1-233	ENST00000610733	EVA1C	P58658	441 aa		11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	TEX35	Q5T0J7	233 aa		11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	ZNF396	Q96N95	335 aa	Predicted RBP	11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	CYP2E1	P05181	493 aa	Predicted RBP	11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	GTF2F1	P35269	517 aa	Known RBP eCLIP	11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	COL9A3	Q14050	684 aa	Predicted RBP	11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	CPLX2	Q6PUV4	134 aa	Known RBP	11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	PROSER2	Q86WR7	435 aa	Predicted RBP	11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	CNNM1	Q9NRU3	951 aa		11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	EDC4	Q6P2E9	1401 aa	Known RBP	11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	FLT4	P35916	1363 aa		11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms