RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-216	ENST00000601816	DBF4	Q9UBU7	674 aa	Predicted RBP	33.83	■■■■□ 3.01
PNKP-216	ENST00000601816	C16orf71	Q8IYS4	520 aa	Predicted RBP	33.81	■■■■□ 3
PNKP-216	ENST00000601816	RPGR	Q92834	1020 aa	Known RBP	33.81	■■■■□ 3
PNKP-216	ENST00000601816	UTP14A	Q9BVJ6	771 aa	Known RBP	33.81	■■■■□ 3
PNKP-216	ENST00000601816	GLTPD2	A6NH11	291 aa		33.8	■■■■□ 3
PNKP-216	ENST00000601816	RRAGC	Q9HB90	399 aa		33.8	■■■■□ 3
PNKP-216	ENST00000601816	ANKRD36C	Q5JPF3	1778 aa		33.79	■■■■□ 3
PNKP-216	ENST00000601816	HSPA6	P17066	643 aa		33.78	■■■■□ 3
PNKP-216	ENST00000601816	TCIRG1	Q13488	830 aa		33.78	■■■■□ 3
PNKP-216	ENST00000601816	RNF123	Q5XPI4	1314 aa		33.78	■■■■□ 3
PNKP-216	ENST00000601816	HYPK	Q9NX55	129 aa		33.77	■■■■□ 3
PNKP-216	ENST00000601816	HOXA10	P31260	410 aa	Predicted RBP	33.76	■■■□□ 2.99
PNKP-216	ENST00000601816	NLRP10	Q86W26	655 aa		33.76	■■■□□ 2.99
PNKP-216	ENST00000601816	PLBD2	Q8NHP8	589 aa		33.76	■■■□□ 2.99
PNKP-216	ENST00000601816	DICER1	Q9UPY3	1922 aa	Known RBP	33.75	■■■□□ 2.99
PNKP-216	ENST00000601816	FKBP4	Q02790	459 aa	Known RBP eCLIP	33.75	■■■□□ 2.99
PNKP-216	ENST00000601816	OLFM4	Q6UX06	510 aa		33.75	■■■□□ 2.99
PNKP-216	ENST00000601816	RTKN2	Q8IZC4	609 aa		33.75	■■■□□ 2.99
PNKP-216	ENST00000601816	NLRP3	Q96P20	1036 aa		33.75	■■■□□ 2.99
PNKP-216	ENST00000601816	ELL2	O00472	640 aa	Predicted RBP	33.74	■■■□□ 2.99
PNKP-216	ENST00000601816	CCDC27	Q2M243	656 aa		33.74	■■■□□ 2.99
PNKP-216	ENST00000601816	SLC10A5	Q5PT55	438 aa		33.74	■■■□□ 2.99
PNKP-216	ENST00000601816	DPY19L2	Q6NUT2	758 aa		33.74	■■■□□ 2.99
PNKP-216	ENST00000601816	RBM46	Q8TBY0	533 aa	Known RBP	33.74	■■■□□ 2.99
PNKP-216	ENST00000601816	RBM17	Q96I25	401 aa	Known RBP	33.74	■■■□□ 2.99
PNKP-216	ENST00000601816	ANKRD13D	Q6ZTN6	518 aa		33.73	■■■□□ 2.99
PNKP-216	ENST00000601816	C3orf67	Q6ZVT6	689 aa		33.73	■■■□□ 2.99
PNKP-216	ENST00000601816	CRAMP1	Q96RY5	1269 aa		33.72	■■■□□ 2.99
PNKP-216	ENST00000601816	C8orf58	Q8NAV2	365 aa		33.71	■■■□□ 2.99
PNKP-216	ENST00000601816	VEGFA	P15692	232 aa	Predicted RBP	33.7	■■■□□ 2.99
PNKP-216	ENST00000601816	CC2D2B	Q6DHV5	1058 aa		33.7	■■■□□ 2.99
PNKP-216	ENST00000601816	TRMT112	Q9UI30	125 aa	Known RBP	33.7	■■■□□ 2.99
PNKP-216	ENST00000601816	WWC1	Q8IX03	1113 aa		33.69	■■■□□ 2.98
PNKP-216	ENST00000601816	ZNF277	Q9NRM2	450 aa	Predicted RBP	33.69	■■■□□ 2.98
PNKP-216	ENST00000601816	SH3TC1	Q8TE82	1336 aa		33.68	■■■□□ 2.98
PNKP-216	ENST00000601816	CHMP4A	Q9BY43	222 aa		33.67	■■■□□ 2.98
PNKP-216	ENST00000601816	PPEF1	O14829	653 aa	Predicted RBP	33.66	■■■□□ 2.98
PNKP-216	ENST00000601816	HCLS1	P14317	486 aa	Predicted RBP	33.66	■■■□□ 2.98
PNKP-216	ENST00000601816	GOLGA2	Q08379	1002 aa		33.66	■■■□□ 2.98
PNKP-216	ENST00000601816	FSTL1	Q12841	308 aa		33.66	■■■□□ 2.98
PNKP-216	ENST00000601816	NCBP3	Q53F19	620 aa	Known RBP	33.66	■■■□□ 2.98
PNKP-216	ENST00000601816	SNED1	Q8TER0	1413 aa		33.66	■■■□□ 2.98
PNKP-216	ENST00000601816	ISCA1	Q9BUE6	129 aa		33.66	■■■□□ 2.98
PNKP-216	ENST00000601816	SYNE4	Q8N205	404 aa		33.65	■■■□□ 2.98
PNKP-216	ENST00000601816	TSR2	Q969E8	191 aa	Known RBP	33.65	■■■□□ 2.98
PNKP-216	ENST00000601816	WDR90	Q96KV7	1748 aa		33.65	■■■□□ 2.98
PNKP-216	ENST00000601816	CCDC30	Q5VVM6	783 aa		33.64	■■■□□ 2.98
PNKP-216	ENST00000601816	PSMD1	Q99460	953 aa		33.64	■■■□□ 2.98
PNKP-216	ENST00000601816	ATP5J2-PTCD1	G3V325	749 aa		33.63	■■■□□ 2.97
PNKP-216	ENST00000601816	IARS	P41252	1262 aa	Known RBP	33.63	■■■□□ 2.97
PNKP-216	ENST00000601816	GRIPAP1	Q4V328	841 aa		33.63	■■■□□ 2.97
PNKP-216	ENST00000601816	RIC3	Q7Z5B4	369 aa		33.63	■■■□□ 2.97
PNKP-216	ENST00000601816	ZNF428	Q96B54	188 aa		33.63	■■■□□ 2.97
PNKP-216	ENST00000601816	PHAX	Q9H814	394 aa	Known RBP	33.63	■■■□□ 2.97
PNKP-216	ENST00000601816	IL16	Q14005	1332 aa		33.62	■■■□□ 2.97
PNKP-216	ENST00000601816	TCERG1	O14776	1098 aa	Known RBP	33.62	■■■□□ 2.97
PNKP-216	ENST00000601816	TSPYL6	Q8N831	410 aa		33.62	■■■□□ 2.97
PNKP-216	ENST00000601816	DDN	O94850	711 aa	Predicted RBP	33.61	■■■□□ 2.97
PNKP-216	ENST00000601816	APLP1	P51693	650 aa		33.61	■■■□□ 2.97
PNKP-216	ENST00000601816	SMC1B	Q8NDV3	1235 aa		33.61	■■■□□ 2.97
PNKP-216	ENST00000601816	TMX4	Q9H1E5	349 aa	Predicted RBP	33.61	■■■□□ 2.97
PNKP-216	ENST00000601816	ABCC4	O15439	1325 aa		33.6	■■■□□ 2.97
PNKP-216	ENST00000601816	POTEC	B2RU33	542 aa		33.6	■■■□□ 2.97
PNKP-216	ENST00000601816	LAMB2	P55268	1798 aa		33.6	■■■□□ 2.97
PNKP-216	ENST00000601816	TRIM28	Q13263	835 aa	Known RBP	33.59	■■■□□ 2.97
PNKP-216	ENST00000601816	DDX46	Q7L014	1031 aa	Known RBP	33.58	■■■□□ 2.97
PNKP-216	ENST00000601816	CEP350	Q5VT06	3117 aa		33.58	■■■□□ 2.97
PNKP-216	ENST00000601816	SLC51A	Q86UW1	340 aa		33.57	■■■□□ 2.96
PNKP-216	ENST00000601816	FAM89A	Q96GI7	184 aa		33.57	■■■□□ 2.96
PNKP-216	ENST00000601816	SALL2	Q9Y467	1007 aa	Predicted RBP	33.57	■■■□□ 2.96
PNKP-216	ENST00000601816	ATP6V0A2	Q9Y487	856 aa		33.57	■■■□□ 2.96
PNKP-216	ENST00000601816	DDX58	O95786	925 aa	Known RBP	33.56	■■■□□ 2.96
PNKP-216	ENST00000601816	ZNF541	Q9H0D2	1346 aa		33.55	■■■□□ 2.96
PNKP-216	ENST00000601816	BBOX1	O75936	387 aa		33.55	■■■□□ 2.96
PNKP-216	ENST00000601816	TWISTNB	Q3B726	338 aa	Predicted RBP	33.55	■■■□□ 2.96
PNKP-216	ENST00000601816	JDP2	Q8WYK2	163 aa		33.55	■■■□□ 2.96
PNKP-216	ENST00000601816	FAM9B	Q8IZU0	186 aa		33.54	■■■□□ 2.96
PNKP-216	ENST00000601816	MYD88	Q99836	296 aa		33.54	■■■□□ 2.96
PNKP-216	ENST00000601816	STK31	Q9BXU1	1019 aa		33.54	■■■□□ 2.96
PNKP-216	ENST00000601816	DDX60	Q8IY21	1712 aa	Known RBP	33.53	■■■□□ 2.96
PNKP-216	ENST00000601816	GRAP	Q13588	217 aa		33.53	■■■□□ 2.96
PNKP-216	ENST00000601816	GRAPL	Q8TC17	118 aa	Predicted RBP	33.53	■■■□□ 2.96
PNKP-216	ENST00000601816	FZD9	O00144	591 aa		33.52	■■■□□ 2.96
PNKP-216	ENST00000601816	RTL5	Q5HYW3	569 aa	Predicted RBP	33.52	■■■□□ 2.96
PNKP-216	ENST00000601816	WDR63	Q8IWG1	891 aa		33.52	■■■□□ 2.96
PNKP-216	ENST00000601816	L3MBTL3	Q96JM7	780 aa	Predicted RBP	33.52	■■■□□ 2.96
PNKP-216	ENST00000601816	IQCA1L	A6NCM1	817 aa		33.51	■■■□□ 2.95
PNKP-216	ENST00000601816	LARGE2	Q8N3Y3	721 aa		33.51	■■■□□ 2.95
PNKP-216	ENST00000601816	FANCI	Q9NVI1	1328 aa		33.51	■■■□□ 2.95
PNKP-216	ENST00000601816	IRS4	O14654	1257 aa	Predicted RBP	33.5	■■■□□ 2.95
PNKP-216	ENST00000601816	SP8	Q8IXZ3	490 aa		33.5	■■■□□ 2.95
PNKP-216	ENST00000601816	SF3B3	Q15393	1217 aa	Known RBP	33.49	■■■□□ 2.95
PNKP-216	ENST00000601816	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	33.49	■■■□□ 2.95
PNKP-216	ENST00000601816	CCDC191	Q8NCU4	936 aa		33.49	■■■□□ 2.95
PNKP-216	ENST00000601816	METTL22	Q9BUU2	404 aa	Predicted RBP	33.49	■■■□□ 2.95
PNKP-216	ENST00000601816	COL4A5	P29400	1685 aa		33.48	■■■□□ 2.95
PNKP-216	ENST00000601816	EIF6	P56537	245 aa	Known RBP	33.47	■■■□□ 2.95
PNKP-216	ENST00000601816	TMC4	Q7Z404	712 aa		33.47	■■■□□ 2.95
PNKP-216	ENST00000601816	SUPT20H	Q8NEM7	779 aa		33.47	■■■□□ 2.95
PNKP-216	ENST00000601816	CWC25	Q9NXE8	425 aa	Predicted RBP	33.47	■■■□□ 2.95

Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms