RNA–Protein interactions for RNA: ENST00000600879.5

HIF3A-219, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-219ENST00000600879 ABCC12Q96J65 1359 aa13.38□□□□□ -0.27
HIF3A-219ENST00000600879 KLRG2A4D1S0 409 aaPredicted RBP13.38□□□□□ -0.27
HIF3A-219ENST00000600879 GTF2E1P29083 439 aaPredicted RBP13.38□□□□□ -0.27
HIF3A-219ENST00000600879 SOX10P56693 466 aa13.38□□□□□ -0.27
HIF3A-219ENST00000600879 DLK2Q6UY11 383 aa13.38□□□□□ -0.27
HIF3A-219ENST00000600879 TPTE2Q6XPS3 522 aa13.38□□□□□ -0.27
HIF3A-219ENST00000600879 SNED1Q8TER0 1413 aa13.38□□□□□ -0.27
HIF3A-219ENST00000600879 COL3A1P02461 1466 aaPredicted RBP13.37□□□□□ -0.27
HIF3A-219ENST00000600879 TNRC18O15417 2968 aaPredicted RBP13.37□□□□□ -0.27
HIF3A-219ENST00000600879 NBPF26B4DH59 902 aa13.37□□□□□ -0.27
HIF3A-219ENST00000600879 CELF2O95319 508 aaKnown RBP13.37□□□□□ -0.27
HIF3A-219ENST00000600879 CIAPIN1Q6FI81 312 aa13.37□□□□□ -0.27
HIF3A-219ENST00000600879 NBPF10Q6P3W6 841 aaKnown RBP13.37□□□□□ -0.27
HIF3A-219ENST00000600879 CLEC4GQ6UXB4 293 aa13.37□□□□□ -0.27
HIF3A-219ENST00000600879 LARGE2Q8N3Y3 721 aa13.37□□□□□ -0.27
HIF3A-219ENST00000600879 NGEFQ8N5V2 710 aa13.37□□□□□ -0.27
HIF3A-219ENST00000600879 NBPF15Q8N660 670 aa13.37□□□□□ -0.27
HIF3A-219ENST00000600879 PHACTR3Q96KR7 559 aa13.37□□□□□ -0.27
HIF3A-219ENST00000600879 GLIS2Q9BZE0 524 aaPredicted RBP13.37□□□□□ -0.27
HIF3A-219ENST00000600879 CEMIPQ8WUJ3 1361 aa13.36□□□□□ -0.27
HIF3A-219ENST00000600879 ALDH1B1P30837 517 aa13.36□□□□□ -0.27
HIF3A-219ENST00000600879 KIF7Q2M1P5 1343 aa13.36□□□□□ -0.27
HIF3A-219ENST00000600879 SNRPA1P09661 255 aaKnown RBP13.35□□□□□ -0.27
HIF3A-219ENST00000600879 PRKAR2BP31323 418 aa13.35□□□□□ -0.27
HIF3A-219ENST00000600879 MCM10Q7L590 875 aa13.35□□□□□ -0.27
HIF3A-219ENST00000600879 SAPCD2Q86UD0 394 aa13.35□□□□□ -0.27
HIF3A-219ENST00000600879 PSMD1Q99460 953 aa13.35□□□□□ -0.27
HIF3A-219ENST00000600879 MAP2K2P36507 400 aa13.34□□□□□ -0.27
HIF3A-219ENST00000600879 DCTN1Q14203 1278 aa13.34□□□□□ -0.27
HIF3A-219ENST00000600879 C3orf67Q6ZVT6 689 aa13.34□□□□□ -0.27
HIF3A-219ENST00000600879 CASP8AP2Q9UKL3 1982 aa13.34□□□□□ -0.27
HIF3A-219ENST00000600879 SHTN1A0MZ66 631 aa13.33□□□□□ -0.28
HIF3A-219ENST00000600879 GPTP24298 496 aa13.33□□□□□ -0.28
HIF3A-219ENST00000600879 AOC3Q16853 763 aa13.33□□□□□ -0.28
HIF3A-219ENST00000600879 USP50Q70EL3 339 aaPredicted RBP13.33□□□□□ -0.28
HIF3A-219ENST00000600879 NIM1KQ8IY84 436 aa13.33□□□□□ -0.28
HIF3A-219ENST00000600879 RPGRQ92834 1020 aaKnown RBP13.33□□□□□ -0.28
HIF3A-219ENST00000600879 PER1O15534 1290 aaPredicted RBP13.32□□□□□ -0.28
HIF3A-219ENST00000600879 PPIP5K2O43314 1243 aa13.32□□□□□ -0.28
HIF3A-219ENST00000600879 GMPSP49915 693 aaPredicted RBP13.32□□□□□ -0.28
HIF3A-219ENST00000600879 RSPH6AQ9H0K4 717 aa13.32□□□□□ -0.28
HIF3A-219ENST00000600879 GPRC5DQ9NZD1 345 aa13.32□□□□□ -0.28
HIF3A-219ENST00000600879 PPEF1O14829 653 aaPredicted RBP13.31□□□□□ -0.28
HIF3A-219ENST00000600879 HIRAP54198 1017 aaPredicted RBP13.31□□□□□ -0.28
HIF3A-219ENST00000600879 BRPF1P55201 1214 aaPredicted RBP13.31□□□□□ -0.28
HIF3A-219ENST00000600879 CRY2Q49AN0 593 aa13.31□□□□□ -0.28
HIF3A-219ENST00000600879 RTF1Q92541 710 aaKnown RBP13.31□□□□□ -0.28
HIF3A-219ENST00000600879 ADARB2Q9NS39 739 aaKnown RBP13.31□□□□□ -0.28
HIF3A-219ENST00000600879 MIS18AQ9NYP9 233 aa13.31□□□□□ -0.28
HIF3A-219ENST00000600879 CXCL9Q07325 125 aa13.3□□□□□ -0.28
HIF3A-219ENST00000600879 TRPM4Q8TD43 1214 aa13.3□□□□□ -0.28
HIF3A-219ENST00000600879 NPC1L1Q9UHC9 1359 aa13.3□□□□□ -0.28
HIF3A-219ENST00000600879 TRPM7Q96QT4 1865 aa13.29□□□□□ -0.28
HIF3A-219ENST00000600879 CA12O43570 354 aa13.29□□□□□ -0.28
HIF3A-219ENST00000600879 RAD17O75943 681 aa13.29□□□□□ -0.28
HIF3A-219ENST00000600879 CC2D2BQ6DHV5 1058 aa13.29□□□□□ -0.28
HIF3A-219ENST00000600879 TTLL7Q6ZT98 887 aa13.29□□□□□ -0.28
HIF3A-219ENST00000600879 NYXQ9GZU5 481 aa13.29□□□□□ -0.28
HIF3A-219ENST00000600879 UBN2Q6ZU65 1347 aa13.29□□□□□ -0.28
HIF3A-219ENST00000600879 SUSD4Q5VX71 490 aa13.28□□□□□ -0.28
HIF3A-219ENST00000600879 USP48Q86UV5 1035 aa13.28□□□□□ -0.28
HIF3A-219ENST00000600879 ZBTB3Q9H5J0 574 aa13.28□□□□□ -0.28
HIF3A-219ENST00000600879 RRP7AQ9Y3A4 280 aaKnown RBP13.28□□□□□ -0.28
HIF3A-219ENST00000600879 U2AF1L5P0DN76 240 aaPredicted RBP13.27□□□□□ -0.29
HIF3A-219ENST00000600879 MYL6BP14649 208 aa13.27□□□□□ -0.29
HIF3A-219ENST00000600879 HOXA10P31260 410 aaPredicted RBP13.27□□□□□ -0.29
HIF3A-219ENST00000600879 ZEB1P37275 1124 aaPredicted RBP13.27□□□□□ -0.29
HIF3A-219ENST00000600879 HUNKP57058 714 aa13.27□□□□□ -0.29
HIF3A-219ENST00000600879 U2AF1Q01081 240 aaKnown RBP eCLIP13.27□□□□□ -0.29
HIF3A-219ENST00000600879 ZNF428Q96B54 188 aa13.27□□□□□ -0.29
HIF3A-219ENST00000600879 RBM17Q96I25 401 aaKnown RBP13.27□□□□□ -0.29
HIF3A-219ENST00000600879 BCL2L13Q9BXK5 485 aa13.27□□□□□ -0.29
HIF3A-219ENST00000600879 RGL2O15211 777 aa13.26□□□□□ -0.29
HIF3A-219ENST00000600879 KIF6Q6ZMV9 814 aa13.26□□□□□ -0.29
HIF3A-219ENST00000600879 MAP3K15Q6ZN16 1313 aa13.26□□□□□ -0.29
HIF3A-219ENST00000600879 CFAP53Q96M91 514 aa13.26□□□□□ -0.29
HIF3A-219ENST00000600879 ZNRF3Q9ULT6 936 aa13.26□□□□□ -0.29
HIF3A-219ENST00000600879 RIC1Q4ADV7 1423 aa13.25□□□□□ -0.29
HIF3A-219ENST00000600879 FAM155AB1AL88 458 aaPredicted RBP13.25□□□□□ -0.29
HIF3A-219ENST00000600879 TRPA1O75762 1119 aa13.25□□□□□ -0.29
HIF3A-219ENST00000600879 KIF23Q02241 960 aaPredicted RBP13.25□□□□□ -0.29
HIF3A-219ENST00000600879 CRAMP1Q96RY5 1269 aa13.25□□□□□ -0.29
HIF3A-219ENST00000600879 ZBTB12Q9Y330 459 aaPredicted RBP13.25□□□□□ -0.29
HIF3A-219ENST00000600879 ERVV-1B6SEH8 477 aa13.24□□□□□ -0.29
HIF3A-219ENST00000600879 ADM5C9JUS6 153 aa13.24□□□□□ -0.29
HIF3A-219ENST00000600879 NTSR2O95665 410 aa13.24□□□□□ -0.29
HIF3A-219ENST00000600879 EGFRP00533 1210 aa13.24□□□□□ -0.29
HIF3A-219ENST00000600879 NOGQ13253 232 aa13.24□□□□□ -0.29
HIF3A-219ENST00000600879 TAF7Q15545 349 aaPredicted RBP13.24□□□□□ -0.29
HIF3A-219ENST00000600879 CDC37L1Q7L3B6 337 aa13.24□□□□□ -0.29
HIF3A-219ENST00000600879 SAMD7Q7Z3H4 446 aa13.24□□□□□ -0.29
HIF3A-219ENST00000600879 HHIPL1Q96JK4 782 aa13.24□□□□□ -0.29
HIF3A-219ENST00000600879 PGAP2Q9UHJ9 254 aa13.24□□□□□ -0.29
HIF3A-219ENST00000600879 CNOT7Q9UIV1 285 aaKnown RBP13.24□□□□□ -0.29
HIF3A-219ENST00000600879 NUDCQ9Y266 331 aa13.24□□□□□ -0.29
HIF3A-219ENST00000600879 LAMB4A4D0S4 1761 aa13.24□□□□□ -0.29
HIF3A-219ENST00000600879 NUP98P52948 1817 aa13.23□□□□□ -0.29
HIF3A-219ENST00000600879 YDJCA8MPS7 323 aa13.23□□□□□ -0.29
HIF3A-219ENST00000600879 GRIPAP1Q4V328 841 aa13.23□□□□□ -0.29
HIF3A-219ENST00000600879 RBM26Q5T8P6 1007 aaKnown RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms