RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 CCDC183Q5T5S1 534 aa24.23■■□□□ 1.47
SHKBP1-225ENST00000600733 PDZRN4Q6ZMN7 1036 aaPredicted RBP24.23■■□□□ 1.47
SHKBP1-225ENST00000600733 NECAB1Q8N987 351 aa24.23■■□□□ 1.47
SHKBP1-225ENST00000600733 CCDC39Q9UFE4 941 aa24.23■■□□□ 1.47
SHKBP1-225ENST00000600733 TRPM3Q9HCF6 1732 aaPredicted RBP24.23■■□□□ 1.47
SHKBP1-225ENST00000600733 A0A0D9SFI3 127 aa24.23■■□□□ 1.47
SHKBP1-225ENST00000600733 UBE2HP62256 183 aa24.23■■□□□ 1.47
SHKBP1-225ENST00000600733 MAP4K1Q92918 833 aa24.23■■□□□ 1.47
SHKBP1-225ENST00000600733 MTMR6Q9Y217 621 aa24.23■■□□□ 1.47
SHKBP1-225ENST00000600733 C5P01031 1676 aa24.23■■□□□ 1.47
SHKBP1-225ENST00000600733 ADAMTS7Q9UKP4 1686 aa24.23■■□□□ 1.47
SHKBP1-225ENST00000600733 SH2B1Q9NRF2 756 aaPredicted RBP24.22■■□□□ 1.47
SHKBP1-225ENST00000600733 NEURL1BA8MQ27 555 aa24.22■■□□□ 1.47
SHKBP1-225ENST00000600733 DNM1Q05193 864 aaKnown RBP24.22■■□□□ 1.47
SHKBP1-225ENST00000600733 EPHA10Q5JZY3 1008 aa24.22■■□□□ 1.47
SHKBP1-225ENST00000600733 ZSCAN31Q96LW9 406 aaPredicted RBP24.22■■□□□ 1.47
SHKBP1-225ENST00000600733 ATP6V1DQ9Y5K8 247 aa24.22■■□□□ 1.47
SHKBP1-225ENST00000600733 LARP1Q6PKG0 1096 aaKnown RBP24.21■■□□□ 1.47
SHKBP1-225ENST00000600733 XAGE3Q8WTP9 111 aa24.21■■□□□ 1.47
SHKBP1-225ENST00000600733 FSD1Q9BTV5 496 aa24.21■■□□□ 1.47
SHKBP1-225ENST00000600733 TPCN1Q9ULQ1 816 aa24.21■■□□□ 1.47
SHKBP1-225ENST00000600733 TPM2P07951 284 aa24.21■■□□□ 1.47
SHKBP1-225ENST00000600733 TRHP20396 242 aaPredicted RBP24.21■■□□□ 1.47
SHKBP1-225ENST00000600733 NFATC2IPQ8NCF5 419 aa24.21■■□□□ 1.47
SHKBP1-225ENST00000600733 SLC52A2Q9HAB3 445 aa24.21■■□□□ 1.47
SHKBP1-225ENST00000600733 KDM6AO15550 1401 aaPredicted RBP24.2■■□□□ 1.47
SHKBP1-225ENST00000600733 NPHP4O75161 1426 aaPredicted RBP24.2■■□□□ 1.47
SHKBP1-225ENST00000600733 HIP1O00291 1037 aa24.2■■□□□ 1.46
SHKBP1-225ENST00000600733 SLC27A2O14975 620 aa24.2■■□□□ 1.46
SHKBP1-225ENST00000600733 COPS6Q7L5N1 327 aa24.2■■□□□ 1.46
SHKBP1-225ENST00000600733 VPS37CA5D8V6 355 aaPredicted RBP24.19■■□□□ 1.46
SHKBP1-225ENST00000600733 PRKCSHP14314 528 aaPredicted RBP24.19■■□□□ 1.46
SHKBP1-225ENST00000600733 NEXNQ0ZGT2 675 aa24.19■■□□□ 1.46
SHKBP1-225ENST00000600733 GCKRQ14397 625 aa24.19■■□□□ 1.46
SHKBP1-225ENST00000600733 RAPGEF4Q8WZA2 1011 aa24.19■■□□□ 1.46
SHKBP1-225ENST00000600733 JARID2Q92833 1246 aaPredicted RBP24.19■■□□□ 1.46
SHKBP1-225ENST00000600733 MYD88Q99836 296 aa24.19■■□□□ 1.46
SHKBP1-225ENST00000600733 TAF6LQ9Y6J9 622 aa24.19■■□□□ 1.46
SHKBP1-225ENST00000600733 NPHP3Q7Z494 1330 aa24.19■■□□□ 1.46
SHKBP1-225ENST00000600733 PIP4K2AP48426 406 aaPredicted RBP24.19■■□□□ 1.46
SHKBP1-225ENST00000600733 TCEANC2Q96MN5 208 aa24.19■■□□□ 1.46
SHKBP1-225ENST00000600733 NLRP2Q9NX02 1062 aa24.19■■□□□ 1.46
SHKBP1-225ENST00000600733 PTMAP06454 111 aaKnown RBP24.18■■□□□ 1.46
SHKBP1-225ENST00000600733 EDC3Q96F86 508 aaKnown RBP24.18■■□□□ 1.46
SHKBP1-225ENST00000600733 ZNF496Q96IT1 587 aaPredicted RBP24.18■■□□□ 1.46
SHKBP1-225ENST00000600733 HCLS1P14317 486 aaPredicted RBP24.17■■□□□ 1.46
SHKBP1-225ENST00000600733 MCM5P33992 734 aa24.17■■□□□ 1.46
SHKBP1-225ENST00000600733 ZNF589Q86UQ0 364 aaPredicted RBP24.17■■□□□ 1.46
SHKBP1-225ENST00000600733 FAM184AQ8NB25 1140 aa24.17■■□□□ 1.46
SHKBP1-225ENST00000600733 SNRKQ9NRH2 765 aa24.17■■□□□ 1.46
SHKBP1-225ENST00000600733 SCN11AQ9UI33 1791 aa24.17■■□□□ 1.46
SHKBP1-225ENST00000600733 R3HCC1Q9Y3T6 440 aaKnown RBP24.17■■□□□ 1.46
SHKBP1-225ENST00000600733 LMTK3Q96Q04 1460 aa24.16■■□□□ 1.46
SHKBP1-225ENST00000600733 METTL22Q9BUU2 404 aaPredicted RBP24.16■■□□□ 1.46
SHKBP1-225ENST00000600733 USP25Q9UHP3 1055 aa24.16■■□□□ 1.46
SHKBP1-225ENST00000600733 PHKG2P15735 406 aa24.15■■□□□ 1.46
SHKBP1-225ENST00000600733 HSP90AA2PQ14568 343 aaPredicted RBP24.15■■□□□ 1.46
SHKBP1-225ENST00000600733 MED23Q9ULK4 1368 aa24.15■■□□□ 1.46
SHKBP1-225ENST00000600733 MPNDQ8N594 471 aa24.15■■□□□ 1.46
SHKBP1-225ENST00000600733 PSMA5P28066 241 aa24.14■■□□□ 1.46
SHKBP1-225ENST00000600733 PROSER2Q86WR7 435 aaPredicted RBP24.14■■□□□ 1.46
SHKBP1-225ENST00000600733 USP16Q9Y5T5 823 aa24.14■■□□□ 1.46
SHKBP1-225ENST00000600733 LETM1O95202 739 aaPredicted RBP24.14■■□□□ 1.45
SHKBP1-225ENST00000600733 GIMAP6Q6P9H5 292 aa24.14■■□□□ 1.45
SHKBP1-225ENST00000600733 BLOC1S2Q6QNY1 142 aa24.14■■□□□ 1.45
SHKBP1-225ENST00000600733 C1orf167Q5SNV9 1468 aa24.14■■□□□ 1.45
SHKBP1-225ENST00000600733 UVSSAQ2YD98 709 aa24.13■■□□□ 1.45
SHKBP1-225ENST00000600733 LARP1BQ659C4 914 aaKnown RBP24.13■■□□□ 1.45
SHKBP1-225ENST00000600733 ANKRD13DQ6ZTN6 518 aa24.13■■□□□ 1.45
SHKBP1-225ENST00000600733 MEGF6O75095 1541 aa24.13■■□□□ 1.45
SHKBP1-225ENST00000600733 MRC1P22897 1456 aa24.13■■□□□ 1.45
SHKBP1-225ENST00000600733 RRP9O43818 475 aaKnown RBP24.13■■□□□ 1.45
SHKBP1-225ENST00000600733 RNF20Q5VTR2 975 aa24.13■■□□□ 1.45
SHKBP1-225ENST00000600733 FERMT3Q86UX7 667 aa24.13■■□□□ 1.45
SHKBP1-225ENST00000600733 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP24.13■■□□□ 1.45
SHKBP1-225ENST00000600733 NDUFB9Q9Y6M9 179 aa24.13■■□□□ 1.45
SHKBP1-225ENST00000600733 TATP17735 454 aaPredicted RBP24.12■■□□□ 1.45
SHKBP1-225ENST00000600733 CSPP1Q1MSJ5 1256 aa24.12■■□□□ 1.45
SHKBP1-225ENST00000600733 CDC37L1Q7L3B6 337 aa24.12■■□□□ 1.45
SHKBP1-225ENST00000600733 LRP10Q7Z4F1 713 aa24.12■■□□□ 1.45
SHKBP1-225ENST00000600733 DDX17Q92841 729 aaKnown RBP24.12■■□□□ 1.45
SHKBP1-225ENST00000600733 DBNLQ9UJU6 430 aaKnown RBP24.12■■□□□ 1.45
SHKBP1-225ENST00000600733 RPS6KB1P23443 525 aa24.12■■□□□ 1.45
SHKBP1-225ENST00000600733 FAM173BQ6P4H8 233 aa24.11■■□□□ 1.45
SHKBP1-225ENST00000600733 TFCP2Q12800 502 aa24.1■■□□□ 1.45
SHKBP1-225ENST00000600733 TOB2Q14106 344 aaPredicted RBP24.1■■□□□ 1.45
SHKBP1-225ENST00000600733 UBE3BQ7Z3V4 1068 aa24.1■■□□□ 1.45
SHKBP1-225ENST00000600733 COPRSQ9NQ92 184 aa24.1■■□□□ 1.45
SHKBP1-225ENST00000600733 CHGBP05060 677 aa24.1■■□□□ 1.45
SHKBP1-225ENST00000600733 RFX5P48382 616 aaPredicted RBP24.1■■□□□ 1.45
SHKBP1-225ENST00000600733 PTPN12Q05209 780 aaKnown RBP24.1■■□□□ 1.45
SHKBP1-225ENST00000600733 FUCA2Q9BTY2 467 aa24.1■■□□□ 1.45
SHKBP1-225ENST00000600733 ALS2Q96Q42 1657 aa24.09■■□□□ 1.45
SHKBP1-225ENST00000600733 TAF5LO75529 589 aa24.09■■□□□ 1.45
SHKBP1-225ENST00000600733 ADCY5O95622 1261 aa24.09■■□□□ 1.45
SHKBP1-225ENST00000600733 COL15A1P39059 1388 aa24.09■■□□□ 1.45
SHKBP1-225ENST00000600733 ATP5J2-PTCD1G3V325 749 aa24.09■■□□□ 1.45
SHKBP1-225ENST00000600733 PTCD1O75127 700 aaKnown RBP24.09■■□□□ 1.45
SHKBP1-225ENST00000600733 TNNI3KQ59H18 835 aa24.09■■□□□ 1.45
SHKBP1-225ENST00000600733 IFNL2Q8IZJ0 200 aa24.09■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms