RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 UBN2Q6ZU65 1347 aa20.88■□□□□ 0.93
LSM4-206ENST00000600289 ZC3H4Q9UPT8 1303 aaKnown RBP20.88■□□□□ 0.93
LSM4-206ENST00000600289 CHRNA5P30532 468 aa20.88■□□□□ 0.93
LSM4-206ENST00000600289 HSP90AB3PQ58FF7 597 aa20.88■□□□□ 0.93
LSM4-206ENST00000600289 CCDC30Q5VVM6 783 aa20.88■□□□□ 0.93
LSM4-206ENST00000600289 TSPYL6Q8N831 410 aa20.88■□□□□ 0.93
LSM4-206ENST00000600289 NYXQ9GZU5 481 aa20.88■□□□□ 0.93
LSM4-206ENST00000600289 ELL2O00472 640 aaPredicted RBP20.87■□□□□ 0.93
LSM4-206ENST00000600289 VEGFAP15692 232 aaPredicted RBP20.87■□□□□ 0.93
LSM4-206ENST00000600289 TWISTNBQ3B726 338 aaPredicted RBP20.87■□□□□ 0.93
LSM4-206ENST00000600289 PARP10Q53GL7 1025 aa20.87■□□□□ 0.93
LSM4-206ENST00000600289 RNF123Q5XPI4 1314 aa20.86■□□□□ 0.93
LSM4-206ENST00000600289 KLRG2A4D1S0 409 aaPredicted RBP20.86■□□□□ 0.93
LSM4-206ENST00000600289 H0YIN7 160 aa20.86■□□□□ 0.93
LSM4-206ENST00000600289 GOLGA2Q08379 1002 aa20.86■□□□□ 0.93
LSM4-206ENST00000600289 DALRD3Q5D0E6 543 aaKnown RBP20.86■□□□□ 0.93
LSM4-206ENST00000600289 C2CD5Q86YS7 1000 aa20.86■□□□□ 0.93
LSM4-206ENST00000600289 PLBD2Q8NHP8 589 aa20.86■□□□□ 0.93
LSM4-206ENST00000600289 MYH16Q9H6N6 1097 aa20.86■□□□□ 0.93
LSM4-206ENST00000600289 SPINK5Q9NQ38 1064 aaPredicted RBP20.86■□□□□ 0.93
LSM4-206ENST00000600289 DICER1Q9UPY3 1922 aaKnown RBP20.86■□□□□ 0.93
LSM4-206ENST00000600289 DDX60Q8IY21 1712 aaKnown RBP20.85■□□□□ 0.93
LSM4-206ENST00000600289 RASSF7Q02833 373 aa20.85■□□□□ 0.93
LSM4-206ENST00000600289 AIMP1Q12904 312 aaKnown RBP20.85■□□□□ 0.93
LSM4-206ENST00000600289 MKRN1Q9UHC7 482 aaKnown RBP20.85■□□□□ 0.93
LSM4-206ENST00000600289 FER1L6Q2WGJ9 1857 aa20.84■□□□□ 0.93
LSM4-206ENST00000600289 GLTPD2A6NH11 291 aa20.84■□□□□ 0.93
LSM4-206ENST00000600289 NPHP1O15259 732 aa20.84■□□□□ 0.93
LSM4-206ENST00000600289 TCIRG1Q13488 830 aa20.84■□□□□ 0.93
LSM4-206ENST00000600289 ANKRD13DQ6ZTN6 518 aa20.84■□□□□ 0.93
LSM4-206ENST00000600289 MIER1Q8N108 512 aa20.84■□□□□ 0.93
LSM4-206ENST00000600289 SLX4Q8IY92 1834 aa20.83■□□□□ 0.93
LSM4-206ENST00000600289 POTECB2RU33 542 aa20.83■□□□□ 0.93
LSM4-206ENST00000600289 NTSR2O95665 410 aa20.83■□□□□ 0.93
LSM4-206ENST00000600289 GPTP24298 496 aa20.83■□□□□ 0.93
LSM4-206ENST00000600289 PPP1R42Q7Z4L9 355 aa20.83■□□□□ 0.93
LSM4-206ENST00000600289 CREBZFQ9NS37 354 aa20.83■□□□□ 0.93
LSM4-206ENST00000600289 ABCC12Q96J65 1359 aa20.83■□□□□ 0.92
LSM4-206ENST00000600289 TNRC18O15417 2968 aaPredicted RBP20.82■□□□□ 0.92
LSM4-206ENST00000600289 SRGNP10124 158 aa20.82■□□□□ 0.92
LSM4-206ENST00000600289 SUSD4Q5VX71 490 aa20.82■□□□□ 0.92
LSM4-206ENST00000600289 STYK1Q6J9G0 422 aa20.82■□□□□ 0.92
LSM4-206ENST00000600289 CCDC24Q8N4L8 307 aa20.82■□□□□ 0.92
LSM4-206ENST00000600289 EXOSC9Q06265 439 aaKnown RBP20.81■□□□□ 0.92
LSM4-206ENST00000600289 TTLL6Q8N841 843 aa20.81■□□□□ 0.92
LSM4-206ENST00000600289 STK31Q9BXU1 1019 aa20.81■□□□□ 0.92
LSM4-206ENST00000600289 PHAXQ9H814 394 aaKnown RBP20.81■□□□□ 0.92
LSM4-206ENST00000600289 CNTNAP1P78357 1384 aa20.81■□□□□ 0.92
LSM4-206ENST00000600289 VAMP4O75379 141 aa20.8■□□□□ 0.92
LSM4-206ENST00000600289 NLRP10Q86W26 655 aa20.8■□□□□ 0.92
LSM4-206ENST00000600289 MASTLQ96GX5 879 aa20.8■□□□□ 0.92
LSM4-206ENST00000600289 ABHD8Q96I13 439 aa20.8■□□□□ 0.92
LSM4-206ENST00000600289 ISCA1Q9BUE6 129 aa20.8■□□□□ 0.92
LSM4-206ENST00000600289 FAM177BA6PVY3 158 aa20.79■□□□□ 0.92
LSM4-206ENST00000600289 E9PSI1 815 aa20.79■□□□□ 0.92
LSM4-206ENST00000600289 GTF2E1P29083 439 aaPredicted RBP20.79■□□□□ 0.92
LSM4-206ENST00000600289 CTCFP49711 727 aaPredicted RBP20.79■□□□□ 0.92
LSM4-206ENST00000600289 TRIM28Q13263 835 aaKnown RBP20.79■□□□□ 0.92
LSM4-206ENST00000600289 CRY2Q49AN0 593 aa20.79■□□□□ 0.92
LSM4-206ENST00000600289 ERFEQ4G0M1 354 aa20.79■□□□□ 0.92
LSM4-206ENST00000600289 DDX58O95786 925 aaKnown RBP20.78■□□□□ 0.92
LSM4-206ENST00000600289 NPR1P16066 1061 aa20.78■□□□□ 0.92
LSM4-206ENST00000600289 SLC10A5Q5PT55 438 aa20.78■□□□□ 0.92
LSM4-206ENST00000600289 NUTM1Q86Y26 1132 aa20.78■□□□□ 0.92
LSM4-206ENST00000600289 CNKSR1Q969H4 720 aa20.78■□□□□ 0.92
LSM4-206ENST00000600289 UTP14AQ9BVJ6 771 aaKnown RBP20.78■□□□□ 0.92
LSM4-206ENST00000600289 LMNB1P20700 586 aa20.76■□□□□ 0.91
LSM4-206ENST00000600289 RIC3Q7Z5B4 369 aa20.76■□□□□ 0.91
LSM4-206ENST00000600289 ZNF622Q969S3 477 aaKnown RBP eCLIP20.76■□□□□ 0.91
LSM4-206ENST00000600289 MYH3P11055 1940 aa20.75■□□□□ 0.91
LSM4-206ENST00000600289 LBX1P52954 281 aa20.75■□□□□ 0.91
LSM4-206ENST00000600289 SLFN5Q08AF3 891 aa20.75■□□□□ 0.91
LSM4-206ENST00000600289 SH3TC1Q8TE82 1336 aa20.75■□□□□ 0.91
LSM4-206ENST00000600289 SLC4A2P04920 1241 aa20.74■□□□□ 0.91
LSM4-206ENST00000600289 HOXA10P31260 410 aaPredicted RBP20.74■□□□□ 0.91
LSM4-206ENST00000600289 RGS19P49795 217 aa20.74■□□□□ 0.91
LSM4-206ENST00000600289 MLLT1Q03111 559 aaPredicted RBP20.74■□□□□ 0.91
LSM4-206ENST00000600289 KSR2Q6VAB6 950 aa20.74■□□□□ 0.91
LSM4-206ENST00000600289 TRMT2AQ8IZ69 625 aaKnown RBP20.74■□□□□ 0.91
LSM4-206ENST00000600289 PRPF40BQ6NWY9 871 aaKnown RBP20.73■□□□□ 0.91
LSM4-206ENST00000600289 METTL22Q9BUU2 404 aaPredicted RBP20.73■□□□□ 0.91
LSM4-206ENST00000600289 ALDH1B1P30837 517 aa20.72■□□□□ 0.91
LSM4-206ENST00000600289 FLIIQ13045 1269 aa20.72■□□□□ 0.91
LSM4-206ENST00000600289 AIDAQ96BJ3 306 aa20.72■□□□□ 0.91
LSM4-206ENST00000600289 WBP1LQ9NX94 342 aa20.72■□□□□ 0.91
LSM4-206ENST00000600289 TRMT112Q9UI30 125 aaKnown RBP20.72■□□□□ 0.91
LSM4-206ENST00000600289 LRRC37AA6NMS7 1700 aa20.71■□□□□ 0.91
LSM4-206ENST00000600289 ATP5J2-PTCD1G3V325 749 aa20.71■□□□□ 0.91
LSM4-206ENST00000600289 TCERG1O14776 1098 aaKnown RBP20.71■□□□□ 0.91
LSM4-206ENST00000600289 POTEIP0CG38 1075 aa20.71■□□□□ 0.91
LSM4-206ENST00000600289 POTEJP0CG39 1038 aa20.71■□□□□ 0.91
LSM4-206ENST00000600289 SOGA3Q5TF21 947 aa20.71■□□□□ 0.91
LSM4-206ENST00000600289 CHADLQ6NUI6 762 aa20.71■□□□□ 0.91
LSM4-206ENST00000600289 G2E3Q7L622 706 aa20.71■□□□□ 0.91
LSM4-206ENST00000600289 CCDC191Q8NCU4 936 aa20.71■□□□□ 0.91
LSM4-206ENST00000600289 C7orf43Q8WVR3 580 aa20.71■□□□□ 0.91
LSM4-206ENST00000600289 NLRP3Q96P20 1036 aa20.71■□□□□ 0.91
LSM4-206ENST00000600289 MAP3K2Q9Y2U5 619 aa20.71■□□□□ 0.91
LSM4-206ENST00000600289 PI4KAP2A4QPH2 592 aa20.7■□□□□ 0.9
LSM4-206ENST00000600289 HSPA8P11142 646 aaKnown RBP20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms