RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 GRIPAP1Q4V328 841 aa20.57■□□□□ 0.88
VRK3-221ENST00000600284 SLC10A5Q5PT55 438 aa20.57■□□□□ 0.88
VRK3-221ENST00000600284 XAGE3Q8WTP9 111 aa20.57■□□□□ 0.88
VRK3-221ENST00000600284 NECTIN2Q92692 538 aa20.57■□□□□ 0.88
VRK3-221ENST00000600284 RPGRQ92834 1020 aaKnown RBP20.57■□□□□ 0.88
VRK3-221ENST00000600284 UTP14AQ9BVJ6 771 aaKnown RBP20.57■□□□□ 0.88
VRK3-221ENST00000600284 CEP350Q5VT06 3117 aa20.56■□□□□ 0.88
VRK3-221ENST00000600284 TIAM2Q8IVF5 1701 aa20.56■□□□□ 0.88
VRK3-221ENST00000600284 AIMP1Q12904 312 aaKnown RBP20.56■□□□□ 0.88
VRK3-221ENST00000600284 HDGFL1Q5TGJ6 251 aa20.56■□□□□ 0.88
VRK3-221ENST00000600284 SMC1BQ8NDV3 1235 aa20.56■□□□□ 0.88
VRK3-221ENST00000600284 NLRP3Q96P20 1036 aa20.56■□□□□ 0.88
VRK3-221ENST00000600284 CRAMP1Q96RY5 1269 aa20.56■□□□□ 0.88
VRK3-221ENST00000600284 IFT57Q9NWB7 429 aa20.56■□□□□ 0.88
VRK3-221ENST00000600284 DBF4Q9UBU7 674 aaPredicted RBP20.56■□□□□ 0.88
VRK3-221ENST00000600284 GNAI1P63096 354 aa20.55■□□□□ 0.88
VRK3-221ENST00000600284 TCIRG1Q13488 830 aa20.55■□□□□ 0.88
VRK3-221ENST00000600284 RBM17Q96I25 401 aaKnown RBP20.55■□□□□ 0.88
VRK3-221ENST00000600284 MBIPQ9NS73 344 aa20.55■□□□□ 0.88
VRK3-221ENST00000600284 CHPF2Q9P2E5 772 aa20.55■□□□□ 0.88
VRK3-221ENST00000600284 CACNA1SQ13698 1873 aa20.55■□□□□ 0.88
VRK3-221ENST00000600284 POTECB2RU33 542 aa20.54■□□□□ 0.88
VRK3-221ENST00000600284 DUSP27Q5VZP5 1158 aa20.54■□□□□ 0.88
VRK3-221ENST00000600284 PSMD1Q99460 953 aa20.54■□□□□ 0.88
VRK3-221ENST00000600284 NLRP10Q86W26 655 aa20.53■□□□□ 0.88
VRK3-221ENST00000600284 HYPKQ9NX55 129 aa20.53■□□□□ 0.88
VRK3-221ENST00000600284 WDR90Q96KV7 1748 aa20.53■□□□□ 0.88
VRK3-221ENST00000600284 OLFM4Q6UX06 510 aa20.52■□□□□ 0.88
VRK3-221ENST00000600284 ANKRD13DQ6ZTN6 518 aa20.52■□□□□ 0.88
VRK3-221ENST00000600284 PLBD2Q8NHP8 589 aa20.52■□□□□ 0.88
VRK3-221ENST00000600284 ZNF316A6NFI3 1004 aaPredicted RBP20.51■□□□□ 0.87
VRK3-221ENST00000600284 SYNE4Q8N205 404 aa20.51■□□□□ 0.87
VRK3-221ENST00000600284 CHMP4AQ9BY43 222 aa20.51■□□□□ 0.87
VRK3-221ENST00000600284 ZNF277Q9NRM2 450 aaPredicted RBP20.51■□□□□ 0.87
VRK3-221ENST00000600284 DDNO94850 711 aaPredicted RBP20.5■□□□□ 0.87
VRK3-221ENST00000600284 IARSP41252 1262 aaKnown RBP20.5■□□□□ 0.87
VRK3-221ENST00000600284 SNED1Q8TER0 1413 aa20.5■□□□□ 0.87
VRK3-221ENST00000600284 C3orf67Q6ZVT6 689 aa20.49■□□□□ 0.87
VRK3-221ENST00000600284 DNAJC5GQ8N7S2 189 aa20.49■□□□□ 0.87
VRK3-221ENST00000600284 L3MBTL3Q96JM7 780 aaPredicted RBP20.49■□□□□ 0.87
VRK3-221ENST00000600284 TRMT112Q9UI30 125 aaKnown RBP20.49■□□□□ 0.87
VRK3-221ENST00000600284 SH3TC1Q8TE82 1336 aa20.49■□□□□ 0.87
VRK3-221ENST00000600284 IQCA1LA6NCM1 817 aa20.48■□□□□ 0.87
VRK3-221ENST00000600284 PPEF1O14829 653 aaPredicted RBP20.48■□□□□ 0.87
VRK3-221ENST00000600284 CCDC27Q2M243 656 aa20.48■□□□□ 0.87
VRK3-221ENST00000600284 CCDC184Q52MB2 194 aa20.48■□□□□ 0.87
VRK3-221ENST00000600284 NCBP3Q53F19 620 aaKnown RBP20.48■□□□□ 0.87
VRK3-221ENST00000600284 TMX4Q9H1E5 349 aaPredicted RBP20.48■□□□□ 0.87
VRK3-221ENST00000600284 FZD9O00144 591 aa20.47■□□□□ 0.87
VRK3-221ENST00000600284 JDP2Q8WYK2 163 aa20.47■□□□□ 0.87
VRK3-221ENST00000600284 ISCA1Q9BUE6 129 aa20.47■□□□□ 0.87
VRK3-221ENST00000600284 ANKRD36CQ5JPF3 1778 aa20.46■□□□□ 0.87
VRK3-221ENST00000600284 BBOX1O75936 387 aa20.46■□□□□ 0.87
VRK3-221ENST00000600284 TRIM28Q13263 835 aaKnown RBP20.46■□□□□ 0.87
VRK3-221ENST00000600284 VPS33BQ9H267 617 aa20.46■□□□□ 0.87
VRK3-221ENST00000600284 ATP6V0A2Q9Y487 856 aa20.46■□□□□ 0.87
VRK3-221ENST00000600284 ANP32CO43423 234 aa20.45■□□□□ 0.86
VRK3-221ENST00000600284 HCLS1P14317 486 aaPredicted RBP20.44■□□□□ 0.86
VRK3-221ENST00000600284 ABCC4O15439 1325 aa20.44■□□□□ 0.86
VRK3-221ENST00000600284 ELL2O00472 640 aaPredicted RBP20.43■□□□□ 0.86
VRK3-221ENST00000600284 GOLGA2Q08379 1002 aa20.43■□□□□ 0.86
VRK3-221ENST00000600284 CCDC30Q5VVM6 783 aa20.43■□□□□ 0.86
VRK3-221ENST00000600284 DDX46Q7L014 1031 aaKnown RBP20.43■□□□□ 0.86
VRK3-221ENST00000600284 SP8Q8IXZ3 490 aa20.43■□□□□ 0.86
VRK3-221ENST00000600284 GPC2Q8N158 579 aa20.43■□□□□ 0.86
VRK3-221ENST00000600284 C8orf58Q8NAV2 365 aa20.43■□□□□ 0.86
VRK3-221ENST00000600284 ZNF541Q9H0D2 1346 aa20.43■□□□□ 0.86
VRK3-221ENST00000600284 CHADLQ6NUI6 762 aa20.42■□□□□ 0.86
VRK3-221ENST00000600284 TMC4Q7Z404 712 aa20.42■□□□□ 0.86
VRK3-221ENST00000600284 RIC3Q7Z5B4 369 aa20.42■□□□□ 0.86
VRK3-221ENST00000600284 WWC1Q8IX03 1113 aa20.42■□□□□ 0.86
VRK3-221ENST00000600284 TAF1DQ9H5J8 278 aaPredicted RBP20.42■□□□□ 0.86
VRK3-221ENST00000600284 MRS2Q9HD23 443 aa20.42■□□□□ 0.86
VRK3-221ENST00000600284 ATP5J2-PTCD1G3V325 749 aa20.41■□□□□ 0.86
VRK3-221ENST00000600284 TCERG1O14776 1098 aaKnown RBP20.41■□□□□ 0.86
VRK3-221ENST00000600284 EIF6P56537 245 aaKnown RBP20.41■□□□□ 0.86
VRK3-221ENST00000600284 GRAPQ13588 217 aa20.41■□□□□ 0.86
VRK3-221ENST00000600284 LARGE2Q8N3Y3 721 aa20.41■□□□□ 0.86
VRK3-221ENST00000600284 SUPT20HQ8NEM7 779 aa20.41■□□□□ 0.86
VRK3-221ENST00000600284 GRAPLQ8TC17 118 aaPredicted RBP20.41■□□□□ 0.86
VRK3-221ENST00000600284 KLRG1Q96E93 195 aa20.41■□□□□ 0.86
VRK3-221ENST00000600284 RTFDC1Q9BY42 306 aaPredicted RBP20.41■□□□□ 0.86
VRK3-221ENST00000600284 PHAXQ9H814 394 aaKnown RBP20.41■□□□□ 0.86
VRK3-221ENST00000600284 HACL1Q9UJ83 578 aa20.41■□□□□ 0.86
VRK3-221ENST00000600284 SCN4AP35499 1836 aa20.41■□□□□ 0.86
VRK3-221ENST00000600284 IL16Q14005 1332 aa20.4■□□□□ 0.86
VRK3-221ENST00000600284 SF3B3Q15393 1217 aaKnown RBP20.4■□□□□ 0.86
VRK3-221ENST00000600284 FAM89AQ96GI7 184 aa20.4■□□□□ 0.86
VRK3-221ENST00000600284 DDX58O95786 925 aaKnown RBP20.39■□□□□ 0.85
VRK3-221ENST00000600284 HSP90B1P14625 803 aaKnown RBP20.39■□□□□ 0.85
VRK3-221ENST00000600284 HTRA3P83110 453 aa20.39■□□□□ 0.85
VRK3-221ENST00000600284 LDHDQ86WU2 507 aa20.39■□□□□ 0.85
VRK3-221ENST00000600284 PNMA8AQ86V59 439 aaPredicted RBP20.38■□□□□ 0.85
VRK3-221ENST00000600284 MPNDQ8N594 471 aa20.38■□□□□ 0.85
VRK3-221ENST00000600284 POTEIP0CG38 1075 aa20.37■□□□□ 0.85
VRK3-221ENST00000600284 POTEJP0CG39 1038 aa20.37■□□□□ 0.85
VRK3-221ENST00000600284 EPHX2P34913 555 aa20.37■□□□□ 0.85
VRK3-221ENST00000600284 DPP8Q6V1X1 898 aaPredicted RBP20.37■□□□□ 0.85
VRK3-221ENST00000600284 NIM1KQ8IY84 436 aa20.37■□□□□ 0.85
VRK3-221ENST00000600284 TSPYL6Q8N831 410 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms