RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 NUTM2EB1AL46 878 aaPredicted RBP17.58■□□□□ 0.4
VRK3-217ENST00000599538 HSPA4P34932 840 aa17.58■□□□□ 0.4
VRK3-217ENST00000599538 RAB3GAP1Q15042 981 aa17.58■□□□□ 0.4
VRK3-217ENST00000599538 NUTM2AQ8IVF1 878 aaPredicted RBP17.58■□□□□ 0.4
VRK3-217ENST00000599538 ZGPATQ8N5A5 531 aaKnown RBP17.58■□□□□ 0.4
VRK3-217ENST00000599538 DBNLQ9UJU6 430 aaKnown RBP17.58■□□□□ 0.4
VRK3-217ENST00000599538 CIZ1Q9ULV3 898 aaPredicted RBP17.58■□□□□ 0.4
VRK3-217ENST00000599538 PHLPP1O60346 1717 aa17.58■□□□□ 0.4
VRK3-217ENST00000599538 PLCH1Q4KWH8 1693 aa17.57■□□□□ 0.4
VRK3-217ENST00000599538 PIP4K2BP78356 416 aa17.57■□□□□ 0.4
VRK3-217ENST00000599538 VSIG10Q8N0Z9 540 aa17.57■□□□□ 0.4
VRK3-217ENST00000599538 CCDC191Q8NCU4 936 aa17.57■□□□□ 0.4
VRK3-217ENST00000599538 EDC3Q96F86 508 aaKnown RBP17.57■□□□□ 0.4
VRK3-217ENST00000599538 UPF3BQ9BZI7 483 aaKnown RBP17.57■□□□□ 0.4
VRK3-217ENST00000599538 RAD50Q92878 1312 aa17.57■□□□□ 0.4
VRK3-217ENST00000599538 MCCP23508 829 aa17.57■□□□□ 0.4
VRK3-217ENST00000599538 PRIM1P49642 420 aaKnown RBP17.57■□□□□ 0.4
VRK3-217ENST00000599538 TNNI3KQ59H18 835 aa17.57■□□□□ 0.4
VRK3-217ENST00000599538 ISCA1Q9BUE6 129 aa17.57■□□□□ 0.4
VRK3-217ENST00000599538 FPGT-TNNI3KV9GXZ4 949 aa17.57■□□□□ 0.4
VRK3-217ENST00000599538 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.57■□□□□ 0.4
VRK3-217ENST00000599538 EVI5LQ96CN4 794 aa17.56■□□□□ 0.4
VRK3-217ENST00000599538 ARXQ96QS3 562 aa17.56■□□□□ 0.4
VRK3-217ENST00000599538 DIAPH3Q9NSV4 1193 aa17.56■□□□□ 0.4
VRK3-217ENST00000599538 NDUFB9Q9Y6M9 179 aa17.56■□□□□ 0.4
VRK3-217ENST00000599538 SSFA2P28290 1259 aa17.56■□□□□ 0.4
VRK3-217ENST00000599538 ANAPC15P60006 121 aa17.56■□□□□ 0.4
VRK3-217ENST00000599538 PTH1RQ03431 593 aa17.56■□□□□ 0.4
VRK3-217ENST00000599538 TCIRG1Q13488 830 aa17.56■□□□□ 0.4
VRK3-217ENST00000599538 RASEFQ8IZ41 740 aa17.56■□□□□ 0.4
VRK3-217ENST00000599538 ZNF594Q96JF6 807 aaPredicted RBP17.56■□□□□ 0.4
VRK3-217ENST00000599538 FAM227BQ96M60 508 aa17.56■□□□□ 0.4
VRK3-217ENST00000599538 SPATA31A1Q5TZJ5 1347 aa17.55■□□□□ 0.4
VRK3-217ENST00000599538 WNK3Q9BYP7 1800 aa17.55■□□□□ 0.4
VRK3-217ENST00000599538 PKP1Q13835 747 aa17.55■□□□□ 0.4
VRK3-217ENST00000599538 NOL8Q76FK4 1167 aaKnown RBP17.55■□□□□ 0.4
VRK3-217ENST00000599538 ATG9AQ7Z3C6 839 aa17.55■□□□□ 0.4
VRK3-217ENST00000599538 IL17RAQ96F46 866 aa17.55■□□□□ 0.4
VRK3-217ENST00000599538 STARD3NLO95772 234 aa17.54■□□□□ 0.4
VRK3-217ENST00000599538 CYP19A1P11511 503 aaPredicted RBP17.54■□□□□ 0.4
VRK3-217ENST00000599538 HLFQ16534 295 aa17.54■□□□□ 0.4
VRK3-217ENST00000599538 SYNE4Q8N205 404 aa17.54■□□□□ 0.4
VRK3-217ENST00000599538 DBNDD2Q9BQY9 259 aa17.54■□□□□ 0.4
VRK3-217ENST00000599538 TEX13AQ9BXU3 409 aaPredicted RBP17.54■□□□□ 0.4
VRK3-217ENST00000599538 TMX3Q96JJ7 454 aa17.54■□□□□ 0.4
VRK3-217ENST00000599538 ZBTB1Q9Y2K1 713 aa17.54■□□□□ 0.4
VRK3-217ENST00000599538 LRRC24Q50LG9 513 aa17.53■□□□□ 0.4
VRK3-217ENST00000599538 FAM89AQ96GI7 184 aa17.53■□□□□ 0.4
VRK3-217ENST00000599538 CCDC9Q9Y3X0 531 aaKnown RBP17.53■□□□□ 0.4
VRK3-217ENST00000599538 SNX14Q9Y5W7 946 aa17.53■□□□□ 0.4
VRK3-217ENST00000599538 NRAPQ86VF7 1730 aa17.53■□□□□ 0.4
VRK3-217ENST00000599538 DOT1LQ8TEK3 1739 aa17.53■□□□□ 0.4
VRK3-217ENST00000599538 NMIQ13287 307 aaPredicted RBP17.53■□□□□ 0.4
VRK3-217ENST00000599538 ACSBG1Q96GR2 724 aa17.53■□□□□ 0.4
VRK3-217ENST00000599538 LRP6O75581 1613 aa17.52■□□□□ 0.4
VRK3-217ENST00000599538 A0A0G2JS52 829 aa17.52■□□□□ 0.4
VRK3-217ENST00000599538 EPB41L2O43491 1005 aaKnown RBP17.52■□□□□ 0.4
VRK3-217ENST00000599538 CHGBP05060 677 aa17.52■□□□□ 0.4
VRK3-217ENST00000599538 CCDC85AQ96PX6 553 aaPredicted RBP17.52■□□□□ 0.4
VRK3-217ENST00000599538 PUS3Q9BZE2 481 aaKnown RBP17.52■□□□□ 0.4
VRK3-217ENST00000599538 A0A0D9SFI3 127 aa17.51■□□□□ 0.39
VRK3-217ENST00000599538 GPTP24298 496 aa17.51■□□□□ 0.39
VRK3-217ENST00000599538 DDB1Q16531 1140 aa17.51■□□□□ 0.39
VRK3-217ENST00000599538 KIF6Q6ZMV9 814 aa17.51■□□□□ 0.39
VRK3-217ENST00000599538 KIAA1211Q6ZU35 1233 aa17.51■□□□□ 0.39
VRK3-217ENST00000599538 MAP3K15Q6ZN16 1313 aa17.51■□□□□ 0.39
VRK3-217ENST00000599538 MARCH10Q8NA82 808 aaPredicted RBP17.51■□□□□ 0.39
VRK3-217ENST00000599538 FSD1Q9BTV5 496 aa17.51■□□□□ 0.39
VRK3-217ENST00000599538 CPA1P15085 419 aa17.5■□□□□ 0.39
VRK3-217ENST00000599538 ATP5JP18859 108 aa17.5■□□□□ 0.39
VRK3-217ENST00000599538 TIMM10P62072 90 aa17.5■□□□□ 0.39
VRK3-217ENST00000599538 GIGYF2Q6Y7W6 1299 aaKnown RBP17.5■□□□□ 0.39
VRK3-217ENST00000599538 RUFY2Q8WXA3 655 aa17.5■□□□□ 0.39
VRK3-217ENST00000599538 TRIM28Q13263 835 aaKnown RBP17.5■□□□□ 0.39
VRK3-217ENST00000599538 SPATA31A5Q5VU36 1347 aa17.49■□□□□ 0.39
VRK3-217ENST00000599538 SPATA31A7Q8IWB4 1347 aa17.49■□□□□ 0.39
VRK3-217ENST00000599538 TRAK2O60296 914 aa17.48■□□□□ 0.39
VRK3-217ENST00000599538 CYP2E1P05181 493 aaPredicted RBP17.48■□□□□ 0.39
VRK3-217ENST00000599538 ADCK5Q3MIX3 580 aa17.48■□□□□ 0.39
VRK3-217ENST00000599538 PRPF40BQ6NWY9 871 aaKnown RBP17.48■□□□□ 0.39
VRK3-217ENST00000599538 LARP6Q9BRS8 491 aaKnown RBP17.48■□□□□ 0.39
VRK3-217ENST00000599538 TBC1D2BQ9UPU7 963 aa17.48■□□□□ 0.39
VRK3-217ENST00000599538 EYA2O00167 538 aa17.48■□□□□ 0.39
VRK3-217ENST00000599538 PCCAP05165 728 aaPredicted RBP17.48■□□□□ 0.39
VRK3-217ENST00000599538 COL9A3Q14050 684 aaPredicted RBP17.48■□□□□ 0.39
VRK3-217ENST00000599538 ZNF589Q86UQ0 364 aaPredicted RBP17.48■□□□□ 0.39
VRK3-217ENST00000599538 NEUROD6Q96NK8 337 aa17.48■□□□□ 0.39
VRK3-217ENST00000599538 DNAJC2Q99543 621 aaKnown RBP17.48■□□□□ 0.39
VRK3-217ENST00000599538 ZDHHC9Q9Y397 364 aa17.48■□□□□ 0.39
VRK3-217ENST00000599538 CCDC171Q6TFL3 1326 aa17.48■□□□□ 0.39
VRK3-217ENST00000599538 NLRP10Q86W26 655 aa17.47■□□□□ 0.39
VRK3-217ENST00000599538 ZBTB38Q8NAP3 1195 aaPredicted RBP17.47■□□□□ 0.39
VRK3-217ENST00000599538 GZF1Q9H116 711 aaPredicted RBP17.47■□□□□ 0.39
VRK3-217ENST00000599538 THRAP3Q9Y2W1 955 aaKnown RBP17.47■□□□□ 0.39
VRK3-217ENST00000599538 MCM2P49736 904 aa17.47■□□□□ 0.39
VRK3-217ENST00000599538 CUL4AQ13619 759 aa17.47■□□□□ 0.39
VRK3-217ENST00000599538 NECTIN1Q15223 517 aa17.47■□□□□ 0.39
VRK3-217ENST00000599538 TTC14Q96N46 770 aa17.47■□□□□ 0.39
VRK3-217ENST00000599538 TOM1O60784 492 aa17.46■□□□□ 0.39
VRK3-217ENST00000599538 IL15P40933 162 aaPredicted RBP17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms